Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3595 and Shew_3596 are separated by 112 nucleotides Shew_3596 and Shew_3597 are separated by 156 nucleotides Shew_3597 and Shew_3598 are separated by 169 nucleotides Shew_3598 and Shew_3599 are separated by 99 nucleotides
Shew_3595: Shew_3595 - hypothetical protein (RefSeq), at 4,292,936 to 4,293,388
_3595
Shew_3596: Shew_3596 - methyltransferase type 11 (RefSeq), at 4,293,501 to 4,294,226
_3596
Shew_3597: Shew_3597 - inner membrane protein YjeH (RefSeq), at 4,294,383 to 4,295,642
_3597
Shew_3598: Shew_3598 - AsnC family transcriptional regulator (RefSeq), at 4,295,812 to 4,296,240
_3598
Shew_3599: Shew_3599 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq), at 4,296,340 to 4,298,043
_3599
Position (kb) 4294
4295
4296 Strain fitness (log2 ratio) -1
0
1 at 4293.391 kb on - strand at 4293.462 kb on + strand at 4293.646 kb on - strand, within Shew_3596 at 4293.989 kb on + strand, within Shew_3596 at 4294.020 kb on + strand, within Shew_3596 at 4294.418 kb on - strand at 4294.716 kb on + strand, within Shew_3597 at 4294.847 kb on + strand, within Shew_3597 at 4294.914 kb on - strand, within Shew_3597 at 4295.120 kb on + strand, within Shew_3597 at 4295.143 kb on - strand, within Shew_3597 at 4295.149 kb on + strand, within Shew_3597 at 4295.519 kb on - strand at 4295.827 kb on - strand at 4295.957 kb on + strand, within Shew_3598 at 4296.416 kb on - strand at 4296.533 kb on + strand, within Shew_3599 at 4296.551 kb on - strand, within Shew_3599 at 4296.619 kb on + strand, within Shew_3599
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,293,391 - -0.4 4,293,462 + -0.1 4,293,646 - Shew_3596 0.20 -0.6 4,293,989 + Shew_3596 0.67 +0.1 4,294,020 + Shew_3596 0.71 -0.2 4,294,418 - -0.2 4,294,716 + Shew_3597 0.26 +0.1 4,294,847 + Shew_3597 0.37 -0.6 4,294,914 - Shew_3597 0.42 -0.6 4,295,120 + Shew_3597 0.58 -0.1 4,295,143 - Shew_3597 0.60 -0.6 4,295,149 + Shew_3597 0.61 -0.3 4,295,519 - -0.1 4,295,827 - -0.1 4,295,957 + Shew_3598 0.34 +0.7 4,296,416 - +0.6 4,296,533 + Shew_3599 0.11 +0.5 4,296,551 - Shew_3599 0.12 +0.2 4,296,619 + Shew_3599 0.16 +0.4
Or see this region's nucleotide sequence