Strain Fitness in Shewanella loihica PV-4 around Shew_2431
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,855,805 | + | Shew_2430 | 0.26 | -0.1 | |
2,856,167 | + | Shew_2430 | 0.61 | -0.0 | |
2,856,231 | - | Shew_2430 | 0.68 | -0.2 | |
2,856,231 | - | Shew_2430 | 0.68 | -0.2 | |
2,856,906 | - | Shew_2431 | 0.17 | -0.4 | |
2,856,944 | + | Shew_2431 | 0.19 | +0.0 | |
2,857,047 | - | Shew_2431 | 0.24 | -0.4 | |
2,857,114 | + | Shew_2431 | 0.27 | +0.0 | |
2,857,826 | - | Shew_2431 | 0.61 | -0.8 | |
2,857,958 | + | Shew_2431 | 0.67 | -0.5 | |
2,859,083 | - | Shew_2432 | 0.27 | -0.2 | |
2,859,233 | + | Shew_2432 | 0.37 | +0.6 | |
2,859,233 | + | Shew_2432 | 0.37 | -0.1 | |
2,859,350 | + | Shew_2432 | 0.44 | +0.3 | |
2,859,360 | + | Shew_2432 | 0.44 | +0.1 | |
2,859,368 | - | Shew_2432 | 0.45 | +0.4 |
Or see this region's nucleotide sequence