Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2325 and Shew_2326 overlap by 14 nucleotides Shew_2326 and Shew_2327 are separated by 32 nucleotides Shew_2327 and Shew_2328 are separated by 196 nucleotides
Shew_2325: Shew_2325 - hypothetical protein (RefSeq), at 2,719,779 to 2,720,447
_2325
Shew_2326: Shew_2326 - RepA domain-containing protein (RefSeq), at 2,720,434 to 2,720,778
_2326
Shew_2327: Shew_2327 - hypothetical protein (RefSeq), at 2,720,811 to 2,721,014
_2327
Shew_2328: Shew_2328 - signal transduction histidine kinase, LytS (RefSeq), at 2,721,211 to 2,722,908
_2328
Position (kb) 2720
2721
2722 Strain fitness (log2 ratio) -1
0
1 at 2719.909 kb on + strand, within Shew_2325 at 2719.909 kb on - strand, within Shew_2325 at 2720.115 kb on - strand, within Shew_2325 at 2720.171 kb on + strand, within Shew_2325 at 2720.283 kb on - strand, within Shew_2325 at 2720.283 kb on - strand, within Shew_2325 at 2720.867 kb on + strand, within Shew_2327 at 2721.672 kb on + strand, within Shew_2328 at 2721.690 kb on + strand, within Shew_2328 at 2721.698 kb on - strand, within Shew_2328
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,719,909 + Shew_2325 0.19 +0.1 2,719,909 - Shew_2325 0.19 +0.1 2,720,115 - Shew_2325 0.50 +0.0 2,720,171 + Shew_2325 0.59 -0.2 2,720,283 - Shew_2325 0.75 +0.2 2,720,283 - Shew_2325 0.75 +0.1 2,720,867 + Shew_2327 0.27 -0.4 2,721,672 + Shew_2328 0.27 +0.5 2,721,690 + Shew_2328 0.28 -0.1 2,721,698 - Shew_2328 0.29 +0.4
Or see this region's nucleotide sequence