Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2239 and Shew_2240 are separated by 0 nucleotides Shew_2240 and Shew_2241 are separated by 102 nucleotides Shew_2241 and Shew_2242 are separated by 441 nucleotides
Shew_2239: Shew_2239 - hypothetical protein (RefSeq), at 2,616,973 to 2,617,716
_2239
Shew_2240: Shew_2240 - hypothetical protein (RefSeq), at 2,617,717 to 2,618,553
_2240
Shew_2241: Shew_2241 - hypothetical protein (RefSeq), at 2,618,656 to 2,619,096
_2241
Shew_2242: Shew_2242 - dihydrouridine synthase, DuS (RefSeq), at 2,619,538 to 2,620,467
_2242
Position (kb)
2618
2619
2620 Strain fitness (log2 ratio)
-1
0
1 at 2617.748 kb on - strand at 2618.542 kb on - strand at 2618.621 kb on + strand at 2618.810 kb on + strand, within Shew_2241 at 2619.013 kb on + strand, within Shew_2241 at 2619.063 kb on - strand at 2619.148 kb on - strand at 2619.361 kb on - strand at 2619.376 kb on - strand at 2619.395 kb on - strand at 2619.441 kb on - strand at 2619.933 kb on + strand, within Shew_2242 at 2620.036 kb on + strand, within Shew_2242
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,617,748 - -0.5 2,618,542 - -0.1 2,618,621 + +0.1 2,618,810 + Shew_2241 0.35 +0.8 2,619,013 + Shew_2241 0.81 +0.3 2,619,063 - -0.3 2,619,148 - -0.1 2,619,361 - -1.3 2,619,376 - -0.2 2,619,395 - +0.1 2,619,441 - +0.3 2,619,933 + Shew_2242 0.42 -0.6 2,620,036 + Shew_2242 0.54 +0.2
Or see this region's nucleotide sequence