Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1147 and Shew_1148 are separated by 260 nucleotides Shew_1148 and Shew_1149 are separated by 148 nucleotides Shew_1149 and Shew_1150 are separated by 85 nucleotides Shew_1150 and Shew_1151 are separated by 216 nucleotides
Shew_1147: Shew_1147 - hypothetical protein (RefSeq), at 1,322,126 to 1,322,689
_1147
Shew_1148: Shew_1148 - hypothetical protein (RefSeq), at 1,322,950 to 1,323,399
_1148
Shew_1149: Shew_1149 - LysR family transcriptional regulator (RefSeq), at 1,323,548 to 1,324,423
_1149
Shew_1150: Shew_1150 - transmembrane pair domain-containing protein (RefSeq), at 1,324,509 to 1,324,931
_1150
Shew_1151: Shew_1151 - OmpA/MotB domain-containing protein (RefSeq), at 1,325,148 to 1,325,852
_1151
Position (kb) 1323
1324
1325 Strain fitness (log2 ratio) -1
0
1 at 1322.607 kb on + strand, within Shew_1147 at 1322.615 kb on - strand, within Shew_1147 at 1322.956 kb on - strand at 1323.270 kb on + strand, within Shew_1148 at 1323.286 kb on + strand, within Shew_1148 at 1323.622 kb on + strand at 1323.901 kb on + strand, within Shew_1149 at 1323.909 kb on - strand, within Shew_1149 at 1324.564 kb on + strand, within Shew_1150 at 1324.570 kb on - strand, within Shew_1150 at 1324.572 kb on - strand, within Shew_1150 at 1324.648 kb on - strand, within Shew_1150 at 1324.768 kb on + strand, within Shew_1150 at 1324.925 kb on + strand at 1325.090 kb on + strand at 1325.105 kb on + strand at 1325.229 kb on + strand, within Shew_1151 at 1325.318 kb on + strand, within Shew_1151
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,322,607 + Shew_1147 0.85 -0.1 1,322,615 - Shew_1147 0.87 +0.5 1,322,956 - +0.2 1,323,270 + Shew_1148 0.71 -0.0 1,323,286 + Shew_1148 0.75 -0.1 1,323,622 + +0.1 1,323,901 + Shew_1149 0.40 -0.4 1,323,909 - Shew_1149 0.41 -0.3 1,324,564 + Shew_1150 0.13 +0.1 1,324,570 - Shew_1150 0.14 -0.2 1,324,572 - Shew_1150 0.15 -0.1 1,324,648 - Shew_1150 0.33 -0.2 1,324,768 + Shew_1150 0.61 -0.4 1,324,925 + -0.2 1,325,090 + -0.9 1,325,105 + -0.7 1,325,229 + Shew_1151 0.11 -0.8 1,325,318 + Shew_1151 0.24 -0.7
Or see this region's nucleotide sequence