Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0733 and Shew_0734 are separated by 237 nucleotides Shew_0734 and Shew_0735 are separated by 20 nucleotides Shew_0735 and Shew_0736 are separated by 104 nucleotides
Shew_0733: Shew_0733 - hypothetical protein (RefSeq), at 834,650 to 835,405
_0733
Shew_0734: Shew_0734 - Fe-S metabolism associated SufE (RefSeq), at 835,643 to 836,095
_0734
Shew_0735: Shew_0735 - SufS subfamily cysteine desulfurase (RefSeq), at 836,116 to 837,327
_0735
Shew_0736: Shew_0736 - aldo/keto reductase (RefSeq), at 837,432 to 838,472
_0736
Position (kb) 836
837
838 Strain fitness (log2 ratio) -1
0
1 at 835.380 kb on + strand at 835.542 kb on + strand at 835.550 kb on - strand at 836.082 kb on - strand at 836.608 kb on - strand, within Shew_0735 at 836.762 kb on + strand, within Shew_0735 at 837.045 kb on - strand, within Shew_0735 at 837.097 kb on - strand, within Shew_0735 at 837.591 kb on + strand, within Shew_0736 at 837.967 kb on + strand, within Shew_0736 at 838.136 kb on - strand, within Shew_0736
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 835,380 + +0.2 835,542 + -0.4 835,550 - +0.2 836,082 - -0.9 836,608 - Shew_0735 0.41 -0.3 836,762 + Shew_0735 0.53 -0.1 837,045 - Shew_0735 0.77 -0.7 837,097 - Shew_0735 0.81 -0.4 837,591 + Shew_0736 0.15 -0.5 837,967 + Shew_0736 0.51 -0.0 838,136 - Shew_0736 0.68 +0.1
Or see this region's nucleotide sequence