Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0677 and Shew_0678 are separated by 195 nucleotides Shew_0678 and Shew_0679 are separated by 64 nucleotides Shew_0679 and Shew_0680 are separated by 87 nucleotides
Shew_0677: Shew_0677 - hypothetical protein (RefSeq), at 771,168 to 772,799
_0677
Shew_0678: Shew_0678 - protoporphyrinogen oxidase (RefSeq), at 772,995 to 773,516
_0678
Shew_0679: Shew_0679 - hypothetical protein (RefSeq), at 773,581 to 774,105
_0679
Shew_0680: Shew_0680 - LysR family transcriptional regulator (RefSeq), at 774,193 to 775,065
_0680
Position (kb) 773
774
775 Strain fitness (log2 ratio) -1
0
1 at 772.719 kb on + strand at 772.724 kb on + strand at 772.727 kb on - strand at 772.732 kb on - strand at 772.754 kb on - strand at 772.754 kb on - strand at 772.761 kb on - strand at 773.038 kb on + strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.046 kb on - strand at 773.262 kb on - strand, within Shew_0678 at 773.262 kb on - strand, within Shew_0678 at 773.486 kb on + strand at 773.577 kb on - strand at 774.011 kb on + strand, within Shew_0679 at 774.011 kb on + strand, within Shew_0679 at 774.110 kb on + strand at 774.140 kb on - strand at 774.141 kb on - strand at 774.143 kb on + strand at 774.238 kb on + strand at 774.529 kb on + strand, within Shew_0680 at 774.613 kb on - strand, within Shew_0680 at 774.699 kb on + strand, within Shew_0680 at 774.755 kb on + strand, within Shew_0680
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 772,719 + -0.3 772,724 + +0.1 772,727 - +0.1 772,732 - +0.1 772,754 - +0.2 772,754 - +0.0 772,761 - +0.1 773,038 + +0.6 773,046 - +0.0 773,046 - -0.2 773,046 - +0.1 773,046 - +0.2 773,046 - +0.2 773,262 - Shew_0678 0.51 +0.1 773,262 - Shew_0678 0.51 -0.2 773,486 + -0.2 773,577 - +0.2 774,011 + Shew_0679 0.82 -0.7 774,011 + Shew_0679 0.82 -0.1 774,110 + -0.1 774,140 - -0.2 774,141 - +0.0 774,143 + +0.3 774,238 + -0.1 774,529 + Shew_0680 0.38 +0.2 774,613 - Shew_0680 0.48 -0.1 774,699 + Shew_0680 0.58 +0.1 774,755 + Shew_0680 0.64 +0.0
Or see this region's nucleotide sequence