Strain Fitness in Shewanella loihica PV-4 around Shew_0654

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0653 and Shew_0654 are separated by 403 nucleotidesShew_0654 and Shew_0655 overlap by 4 nucleotides Shew_0653: Shew_0653 - LuxR family transcriptional regulator (RefSeq), at 740,084 to 740,704 _0653 Shew_0654: Shew_0654 - peptidase M16 domain-containing protein (RefSeq), at 741,108 to 742,550 _0654 Shew_0655: Shew_0655 - peptidase M16 domain-containing protein (RefSeq), at 742,547 to 743,971 _0655 Position (kb) 741 742 743Strain fitness (log2 ratio) -2 -1 0 1 2 3at 740.108 kb on + strandat 740.108 kb on + strandat 740.108 kb on + strandat 740.113 kb on + strandat 740.113 kb on + strandat 740.121 kb on - strandat 740.121 kb on - strandat 740.210 kb on + strand, within Shew_0653at 740.210 kb on + strand, within Shew_0653at 740.210 kb on + strand, within Shew_0653at 740.210 kb on + strand, within Shew_0653at 740.210 kb on + strand, within Shew_0653at 740.210 kb on + strand, within Shew_0653at 740.210 kb on + strand, within Shew_0653at 740.210 kb on + strand, within Shew_0653at 740.210 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.215 kb on + strand, within Shew_0653at 740.218 kb on - strand, within Shew_0653at 740.218 kb on - strand, within Shew_0653at 740.218 kb on - strand, within Shew_0653at 740.223 kb on - strand, within Shew_0653at 740.223 kb on - strand, within Shew_0653at 740.223 kb on - strand, within Shew_0653at 740.223 kb on - strand, within Shew_0653at 740.224 kb on + strand, within Shew_0653at 740.225 kb on - strand, within Shew_0653at 740.239 kb on + strand, within Shew_0653at 740.247 kb on - strand, within Shew_0653at 740.248 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.262 kb on + strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on + strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.270 kb on - strand, within Shew_0653at 740.272 kb on + strand, within Shew_0653at 740.276 kb on + strand, within Shew_0653at 740.280 kb on - strand, within Shew_0653at 740.280 kb on - strand, within Shew_0653at 740.281 kb on + strand, within Shew_0653at 740.282 kb on + strand, within Shew_0653at 740.288 kb on + strand, within Shew_0653at 740.289 kb on - strand, within Shew_0653at 740.289 kb on - strand, within Shew_0653at 740.289 kb on - strand, within Shew_0653at 740.289 kb on - strand, within Shew_0653at 740.290 kb on - strand, within Shew_0653at 740.392 kb on + strand, within Shew_0653at 740.400 kb on - strand, within Shew_0653at 740.465 kb on - strand, within Shew_0653at 740.508 kb on + strand, within Shew_0653at 740.531 kb on - strand, within Shew_0653at 740.546 kb on - strand, within Shew_0653at 740.572 kb on + strand, within Shew_0653at 740.572 kb on + strand, within Shew_0653at 740.577 kb on + strand, within Shew_0653at 740.577 kb on + strand, within Shew_0653at 740.577 kb on + strand, within Shew_0653at 740.577 kb on + strand, within Shew_0653at 740.577 kb on + strand, within Shew_0653at 740.577 kb on + strand, within Shew_0653at 740.578 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.582 kb on + strand, within Shew_0653at 740.585 kb on - strand, within Shew_0653at 740.585 kb on - strand, within Shew_0653at 740.585 kb on - strand, within Shew_0653at 740.585 kb on - strand, within Shew_0653at 740.585 kb on - strand, within Shew_0653at 740.585 kb on - strand, within Shew_0653at 740.585 kb on - strand, within Shew_0653at 740.586 kb on - strand, within Shew_0653at 740.586 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.590 kb on - strand, within Shew_0653at 740.596 kb on - strand, within Shew_0653at 740.597 kb on - strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.599 kb on + strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.607 kb on - strand, within Shew_0653at 740.617 kb on - strand, within Shew_0653at 740.625 kb on - strand, within Shew_0653at 740.625 kb on - strand, within Shew_0653at 740.625 kb on - strand, within Shew_0653at 740.625 kb on - strand, within Shew_0653at 740.625 kb on - strand, within Shew_0653at 740.625 kb on - strand, within Shew_0653at 740.637 kb on + strand, within Shew_0653at 740.683 kb on - strandat 740.694 kb on + strandat 740.694 kb on + strandat 740.859 kb on + strandat 740.860 kb on + strandat 740.867 kb on - strandat 740.867 kb on + strandat 740.867 kb on + strandat 740.867 kb on + strandat 740.867 kb on + strandat 740.868 kb on - strandat 740.874 kb on + strandat 740.874 kb on - strandat 740.875 kb on - strandat 740.875 kb on - strandat 740.875 kb on - strandat 740.885 kb on + strandat 740.885 kb on + strandat 740.885 kb on + strandat 740.885 kb on + strandat 740.885 kb on + strandat 740.885 kb on + strandat 740.887 kb on + strandat 740.888 kb on - strandat 740.893 kb on - strandat 740.893 kb on - strandat 740.893 kb on - strandat 740.893 kb on - strandat 740.894 kb on - strandat 740.895 kb on + strandat 740.903 kb on - strandat 740.903 kb on - strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.913 kb on + strandat 740.921 kb on - strandat 740.921 kb on - strandat 740.921 kb on - strandat 740.921 kb on - strandat 740.921 kb on - strandat 740.921 kb on - strandat 740.921 kb on - strandat 740.921 kb on - strandat 740.921 kb on - strandat 740.932 kb on + strandat 740.950 kb on - strandat 740.950 kb on - strandat 740.950 kb on - strandat 740.972 kb on - strandat 740.988 kb on + strandat 741.006 kb on - strandat 741.059 kb on - strandat 741.061 kb on - strandat 741.265 kb on + strand, within Shew_0654at 741.320 kb on - strand, within Shew_0654at 741.338 kb on + strand, within Shew_0654at 741.463 kb on - strand, within Shew_0654at 741.645 kb on + strand, within Shew_0654at 741.671 kb on + strand, within Shew_0654at 741.671 kb on + strand, within Shew_0654at 741.779 kb on + strand, within Shew_0654at 741.826 kb on - strand, within Shew_0654at 741.826 kb on - strand, within Shew_0654at 741.826 kb on - strand, within Shew_0654at 741.915 kb on + strand, within Shew_0654at 741.996 kb on - strand, within Shew_0654at 742.103 kb on + strand, within Shew_0654at 742.106 kb on - strand, within Shew_0654at 742.203 kb on + strand, within Shew_0654at 742.349 kb on + strand, within Shew_0654at 742.459 kb on + strandat 742.648 kb on + strandat 742.649 kb on + strandat 742.855 kb on + strand, within Shew_0655at 742.861 kb on + strand, within Shew_0655at 742.986 kb on + strand, within Shew_0655at 742.986 kb on + strand, within Shew_0655at 743.011 kb on + strand, within Shew_0655at 743.128 kb on + strand, within Shew_0655at 743.262 kb on - strand, within Shew_0655

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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740,108 + +0.7
740,108 + -0.2
740,108 + +0.4
740,113 + -0.1
740,113 + +0.2
740,121 - +0.4
740,121 - -0.1
740,210 + Shew_0653 0.20 +0.2
740,210 + Shew_0653 0.20 +0.0
740,210 + Shew_0653 0.20 +0.0
740,210 + Shew_0653 0.20 -0.0
740,210 + Shew_0653 0.20 -0.2
740,210 + Shew_0653 0.20 +1.1
740,210 + Shew_0653 0.20 +0.0
740,210 + Shew_0653 0.20 +0.0
740,210 + Shew_0653 0.20 -0.1
740,215 + Shew_0653 0.21 +0.3
740,215 + Shew_0653 0.21 +0.1
740,215 + Shew_0653 0.21 +0.3
740,215 + Shew_0653 0.21 +0.1
740,215 + Shew_0653 0.21 +0.3
740,215 + Shew_0653 0.21 -0.1
740,215 + Shew_0653 0.21 +0.1
740,215 + Shew_0653 0.21 +0.9
740,215 + Shew_0653 0.21 +0.2
740,215 + Shew_0653 0.21 +0.5
740,218 - Shew_0653 0.22 +0.2
740,218 - Shew_0653 0.22 +0.4
740,218 - Shew_0653 0.22 +0.2
740,223 - Shew_0653 0.22 +0.1
740,223 - Shew_0653 0.22 +0.6
740,223 - Shew_0653 0.22 -0.2
740,223 - Shew_0653 0.22 +0.0
740,224 + Shew_0653 0.23 +0.7
740,225 - Shew_0653 0.23 +0.0
740,239 + Shew_0653 0.25 -0.1
740,247 - Shew_0653 0.26 -0.4
740,248 + Shew_0653 0.26 -0.0
740,262 + Shew_0653 0.29 +0.1
740,262 + Shew_0653 0.29 -0.1
740,262 + Shew_0653 0.29 +0.0
740,262 + Shew_0653 0.29 +0.5
740,262 + Shew_0653 0.29 +0.2
740,262 + Shew_0653 0.29 -0.2
740,262 + Shew_0653 0.29 -0.1
740,262 + Shew_0653 0.29 +0.1
740,262 + Shew_0653 0.29 -0.1
740,262 + Shew_0653 0.29 -0.1
740,262 + Shew_0653 0.29 +0.3
740,262 + Shew_0653 0.29 +0.5
740,262 + Shew_0653 0.29 -0.1
740,262 + Shew_0653 0.29 -1.5
740,262 + Shew_0653 0.29 -0.2
740,262 + Shew_0653 0.29 -0.2
740,270 - Shew_0653 0.30 +0.2
740,270 - Shew_0653 0.30 +0.4
740,270 - Shew_0653 0.30 -0.1
740,270 - Shew_0653 0.30 +0.0
740,270 + Shew_0653 0.30 +0.1
740,270 - Shew_0653 0.30 +0.0
740,270 - Shew_0653 0.30 -0.8
740,270 - Shew_0653 0.30 +0.1
740,270 - Shew_0653 0.30 -0.1
740,270 - Shew_0653 0.30 -0.0
740,270 - Shew_0653 0.30 -0.1
740,270 - Shew_0653 0.30 -0.0
740,272 + Shew_0653 0.30 +0.0
740,276 + Shew_0653 0.31 +0.9
740,280 - Shew_0653 0.32 +0.4
740,280 - Shew_0653 0.32 -0.2
740,281 + Shew_0653 0.32 +1.1
740,282 + Shew_0653 0.32 +0.0
740,288 + Shew_0653 0.33 +0.0
740,289 - Shew_0653 0.33 +0.1
740,289 - Shew_0653 0.33 +0.2
740,289 - Shew_0653 0.33 -0.6
740,289 - Shew_0653 0.33 -0.1
740,290 - Shew_0653 0.33 +0.4
740,392 + Shew_0653 0.50 -0.4
740,400 - Shew_0653 0.51 +0.2
740,465 - Shew_0653 0.61 +0.2
740,508 + Shew_0653 0.68 +0.2
740,531 - Shew_0653 0.72 +0.8
740,546 - Shew_0653 0.74 +0.3
740,572 + Shew_0653 0.79 +0.1
740,572 + Shew_0653 0.79 -0.1
740,577 + Shew_0653 0.79 +0.4
740,577 + Shew_0653 0.79 -0.3
740,577 + Shew_0653 0.79 +0.0
740,577 + Shew_0653 0.79 -0.4
740,577 + Shew_0653 0.79 -0.1
740,577 + Shew_0653 0.79 -0.2
740,578 + Shew_0653 0.80 -0.1
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 +0.7
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 +0.4
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 +0.4
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 +0.7
740,582 + Shew_0653 0.80 +0.2
740,582 + Shew_0653 0.80 -0.1
740,582 + Shew_0653 0.80 +0.1
740,582 + Shew_0653 0.80 -0.2
740,582 + Shew_0653 0.80 +0.3
740,582 + Shew_0653 0.80 -0.2
740,582 + Shew_0653 0.80 -0.0
740,582 + Shew_0653 0.80 +0.0
740,582 + Shew_0653 0.80 -0.4
740,585 - Shew_0653 0.81 +0.6
740,585 - Shew_0653 0.81 +0.5
740,585 - Shew_0653 0.81 +0.4
740,585 - Shew_0653 0.81 -0.2
740,585 - Shew_0653 0.81 -0.2
740,585 - Shew_0653 0.81 +0.4
740,585 - Shew_0653 0.81 -0.7
740,586 - Shew_0653 0.81 +0.2
740,586 - Shew_0653 0.81 +0.7
740,590 - Shew_0653 0.81 +0.1
740,590 - Shew_0653 0.81 +0.7
740,590 - Shew_0653 0.81 +0.3
740,590 - Shew_0653 0.81 -0.0
740,590 - Shew_0653 0.81 +0.2
740,590 - Shew_0653 0.81 +0.1
740,590 - Shew_0653 0.81 -0.0
740,590 - Shew_0653 0.81 +0.8
740,590 - Shew_0653 0.81 +0.1
740,590 - Shew_0653 0.81 +0.5
740,590 - Shew_0653 0.81 +0.4
740,590 - Shew_0653 0.81 +0.5
740,590 - Shew_0653 0.81 +0.2
740,590 - Shew_0653 0.81 -0.2
740,590 - Shew_0653 0.81 +0.8
740,590 - Shew_0653 0.81 -0.4
740,590 - Shew_0653 0.81 +0.3
740,590 - Shew_0653 0.81 +0.5
740,590 - Shew_0653 0.81 +0.0
740,590 - Shew_0653 0.81 +0.1
740,596 - Shew_0653 0.82 +0.8
740,597 - Shew_0653 0.83 +0.0
740,599 + Shew_0653 0.83 -0.0
740,599 + Shew_0653 0.83 +0.1
740,599 + Shew_0653 0.83 +0.3
740,599 + Shew_0653 0.83 +0.2
740,599 + Shew_0653 0.83 -0.3
740,599 + Shew_0653 0.83 +0.3
740,599 + Shew_0653 0.83 +0.3
740,599 + Shew_0653 0.83 +0.1
740,599 + Shew_0653 0.83 +0.3
740,599 + Shew_0653 0.83 -0.0
740,599 + Shew_0653 0.83 +0.2
740,607 - Shew_0653 0.84 +0.4
740,607 - Shew_0653 0.84 +0.1
740,607 - Shew_0653 0.84 +0.5
740,607 - Shew_0653 0.84 +0.3
740,607 - Shew_0653 0.84 +0.3
740,607 - Shew_0653 0.84 +0.2
740,607 - Shew_0653 0.84 +0.4
740,607 - Shew_0653 0.84 -0.3
740,607 - Shew_0653 0.84 -0.1
740,607 - Shew_0653 0.84 +0.4
740,607 - Shew_0653 0.84 -0.1
740,607 - Shew_0653 0.84 +0.5
740,607 - Shew_0653 0.84 +0.0
740,607 - Shew_0653 0.84 +0.0
740,607 - Shew_0653 0.84 +0.1
740,617 - Shew_0653 0.86 +0.2
740,625 - Shew_0653 0.87 +0.3
740,625 - Shew_0653 0.87 +0.8
740,625 - Shew_0653 0.87 +1.6
740,625 - Shew_0653 0.87 +0.9
740,625 - Shew_0653 0.87 +2.0
740,625 - Shew_0653 0.87 +0.1
740,637 + Shew_0653 0.89 +0.3
740,683 - -0.1
740,694 + +0.4
740,694 + -0.3
740,859 + +0.1
740,860 + -0.2
740,867 - -0.4
740,867 + -0.1
740,867 + +0.5
740,867 + +0.1
740,867 + -0.0
740,868 - -0.5
740,874 + +0.3
740,874 - +0.1
740,875 - +0.5
740,875 - +0.4
740,875 - +0.3
740,885 + +0.8
740,885 + +0.1
740,885 + +0.1
740,885 + -0.0
740,885 + -0.2
740,885 + -0.1
740,887 + +0.1
740,888 - -1.1
740,893 - +0.3
740,893 - +1.0
740,893 - +0.6
740,893 - +0.9
740,894 - -0.7
740,895 + +0.0
740,903 - +0.1
740,903 - -0.5
740,913 + +0.2
740,913 + +0.1
740,913 + -0.5
740,913 + +0.0
740,913 + +0.4
740,913 + -0.5
740,913 + +3.0
740,913 + -0.1
740,913 + +0.0
740,913 + -0.4
740,913 + +0.9
740,913 + -0.1
740,921 - -0.2
740,921 - +0.0
740,921 - +0.4
740,921 - +0.1
740,921 - +0.1
740,921 - +0.6
740,921 - +0.3
740,921 - +0.1
740,921 - -0.1
740,932 + -0.1
740,950 - +0.1
740,950 - +0.3
740,950 - +0.1
740,972 - -0.2
740,988 + -0.2
741,006 - +0.7
741,059 - -0.2
741,061 - +0.0
741,265 + Shew_0654 0.11 -0.8
741,320 - Shew_0654 0.15 +0.3
741,338 + Shew_0654 0.16 -0.0
741,463 - Shew_0654 0.25 +0.2
741,645 + Shew_0654 0.37 -1.2
741,671 + Shew_0654 0.39 +0.1
741,671 + Shew_0654 0.39 -2.0
741,779 + Shew_0654 0.47 -0.7
741,826 - Shew_0654 0.50 -0.2
741,826 - Shew_0654 0.50 -0.0
741,826 - Shew_0654 0.50 -0.2
741,915 + Shew_0654 0.56 +0.2
741,996 - Shew_0654 0.62 -0.1
742,103 + Shew_0654 0.69 -0.0
742,106 - Shew_0654 0.69 +0.6
742,203 + Shew_0654 0.76 +0.1
742,349 + Shew_0654 0.86 +0.1
742,459 + +0.3
742,648 + -0.1
742,649 + +0.1
742,855 + Shew_0655 0.22 +0.2
742,861 + Shew_0655 0.22 +0.2
742,986 + Shew_0655 0.31 -1.3
742,986 + Shew_0655 0.31 +0.4
743,011 + Shew_0655 0.33 -0.2
743,128 + Shew_0655 0.41 -0.0
743,262 - Shew_0655 0.50 -0.0

Or see this region's nucleotide sequence