Strain Fitness in Shewanella loihica PV-4 around Shew_0625

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0623 and Shew_0624 are separated by 70 nucleotidesShew_0624 and Shew_0625 are separated by 90 nucleotidesShew_0625 and Shew_0626 are separated by 13 nucleotidesShew_0626 and Shew_0627 are separated by 11 nucleotides Shew_0623: Shew_0623 - phage shock protein A, PspA (RefSeq), at 707,888 to 708,574 _0623 Shew_0624: Shew_0624 - hypothetical protein (RefSeq), at 708,645 to 709,058 _0624 Shew_0625: Shew_0625 - spermidine synthase (RefSeq), at 709,149 to 710,876 _0625 Shew_0626: Shew_0626 - hypothetical protein (RefSeq), at 710,890 to 711,789 _0626 Shew_0627: Shew_0627 - hypothetical protein (RefSeq), at 711,801 to 712,757 _0627 Position (kb) 709 710 711Strain fitness (log2 ratio) -2 -1 0 1at 708.203 kb on - strand, within Shew_0623at 708.685 kb on - strandat 709.233 kb on + strandat 709.289 kb on + strandat 709.289 kb on + strandat 709.289 kb on + strandat 709.297 kb on - strandat 709.300 kb on + strandat 709.448 kb on + strand, within Shew_0625at 709.496 kb on - strand, within Shew_0625at 709.607 kb on + strand, within Shew_0625at 709.703 kb on - strand, within Shew_0625at 709.822 kb on + strand, within Shew_0625at 709.841 kb on + strand, within Shew_0625at 710.222 kb on + strand, within Shew_0625at 710.222 kb on + strand, within Shew_0625at 710.543 kb on + strand, within Shew_0625at 710.880 kb on + strandat 710.991 kb on + strand, within Shew_0626at 711.036 kb on + strand, within Shew_0626at 711.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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708,203 - Shew_0623 0.46 -2.4
708,685 - -0.1
709,233 + +0.7
709,289 + +0.7
709,289 + +0.2
709,289 + +0.4
709,297 - +0.5
709,300 + +0.2
709,448 + Shew_0625 0.17 +1.2
709,496 - Shew_0625 0.20 +0.4
709,607 + Shew_0625 0.27 +0.6
709,703 - Shew_0625 0.32 +0.2
709,822 + Shew_0625 0.39 +0.5
709,841 + Shew_0625 0.40 +0.7
710,222 + Shew_0625 0.62 +0.4
710,222 + Shew_0625 0.62 +0.7
710,543 + Shew_0625 0.81 +0.7
710,880 + +0.5
710,991 + Shew_0626 0.11 +0.6
711,036 + Shew_0626 0.16 +0.3
711,835 - +0.4

Or see this region's nucleotide sequence