Strain Fitness in Shewanella loihica PV-4 around Shew_0509

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0508 and Shew_0509 are separated by 265 nucleotidesShew_0509 and Shew_0510 are separated by 52 nucleotides Shew_0508: Shew_0508 - xanthine/uracil/vitamin C permease (RefSeq), at 566,781 to 567,938 _0508 Shew_0509: Shew_0509 - hypothetical protein (RefSeq), at 568,204 to 568,629 _0509 Shew_0510: Shew_0510 - putative outer membrane adhesin like proteiin (RefSeq), at 568,682 to 577,120 _0510 Position (kb) 568 569Strain fitness (log2 ratio) -1 0 1at 567.397 kb on + strand, within Shew_0508at 567.595 kb on - strand, within Shew_0508at 567.665 kb on - strand, within Shew_0508at 567.680 kb on - strand, within Shew_0508at 567.774 kb on - strand, within Shew_0508at 568.067 kb on + strandat 568.440 kb on - strand, within Shew_0509at 568.442 kb on + strand, within Shew_0509at 568.871 kb on - strandat 569.139 kb on + strandat 569.185 kb on + strandat 569.335 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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567,397 + Shew_0508 0.53 +0.2
567,595 - Shew_0508 0.70 -0.5
567,665 - Shew_0508 0.76 +0.3
567,680 - Shew_0508 0.78 +0.3
567,774 - Shew_0508 0.86 -0.2
568,067 + -0.0
568,440 - Shew_0509 0.55 -1.7
568,442 + Shew_0509 0.56 -0.4
568,871 - -0.6
569,139 + -0.1
569,185 + -0.4
569,335 + +0.1

Or see this region's nucleotide sequence