Strain Fitness in Shewanella loihica PV-4 around Shew_0406

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0404 and Shew_0405 overlap by 4 nucleotidesShew_0405 and Shew_0406 overlap by 1 nucleotidesShew_0406 and Shew_0407 are separated by 97 nucleotides Shew_0404: Shew_0404 - rod shape-determining protein MreC (RefSeq), at 454,178 to 455,059 _0404 Shew_0405: Shew_0405 - rod shape-determining protein MreD (RefSeq), at 455,056 to 455,544 _0405 Shew_0406: Shew_0406 - maf protein (RefSeq), at 455,544 to 456,134 _0406 Shew_0407: Shew_0407 - ribonuclease G (RefSeq), at 456,232 to 457,734 _0407 Position (kb) 455 456 457Strain fitness (log2 ratio) -1 0 1at 454.977 kb on + strandat 455.556 kb on + strandat 455.714 kb on + strand, within Shew_0406at 455.796 kb on + strand, within Shew_0406at 455.865 kb on + strand, within Shew_0406at 455.969 kb on - strand, within Shew_0406at 456.345 kb on + strandat 456.631 kb on + strand, within Shew_0407at 456.840 kb on + strand, within Shew_0407

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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454,977 + +0.0
455,556 + -0.0
455,714 + Shew_0406 0.29 -0.3
455,796 + Shew_0406 0.43 -0.6
455,865 + Shew_0406 0.54 +0.5
455,969 - Shew_0406 0.72 +0.1
456,345 + -0.5
456,631 + Shew_0407 0.27 +0.9
456,840 + Shew_0407 0.40 -0.1

Or see this region's nucleotide sequence