Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0970

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0969 and Dshi_0970 overlap by 13 nucleotidesDshi_0970 and Dshi_0971 are separated by 11 nucleotides Dshi_0969: Dshi_0969 - Mannitol dehydrogenase domain (RefSeq), at 990,448 to 991,947 _0969 Dshi_0970: Dshi_0970 - short-chain dehydrogenase/reductase SDR (RefSeq), at 991,935 to 992,426 _0970 Dshi_0971: Dshi_0971 - ABC transporter related (RefSeq), at 992,438 to 993,442 _0971 Position (kb) 991 992 993Strain fitness (log2 ratio) -2 -1 0 1at 990.996 kb on - strand, within Dshi_0969at 991.086 kb on - strand, within Dshi_0969at 991.286 kb on + strand, within Dshi_0969at 991.313 kb on - strand, within Dshi_0969at 991.315 kb on + strand, within Dshi_0969at 991.511 kb on + strand, within Dshi_0969at 991.749 kb on + strand, within Dshi_0969at 991.813 kb on + strandat 991.873 kb on + strandat 991.909 kb on + strandat 991.968 kb on + strandat 991.984 kb on + strandat 992.010 kb on - strand, within Dshi_0970at 992.012 kb on + strand, within Dshi_0970at 992.046 kb on - strand, within Dshi_0970at 992.090 kb on - strand, within Dshi_0970at 992.171 kb on + strand, within Dshi_0970at 992.183 kb on + strand, within Dshi_0970at 992.220 kb on - strand, within Dshi_0970at 992.263 kb on - strand, within Dshi_0970at 992.326 kb on - strand, within Dshi_0970at 992.347 kb on - strand, within Dshi_0970at 992.614 kb on + strand, within Dshi_0971at 992.636 kb on - strand, within Dshi_0971at 992.849 kb on - strand, within Dshi_0971at 992.853 kb on + strand, within Dshi_0971at 992.863 kb on + strand, within Dshi_0971at 992.864 kb on + strand, within Dshi_0971at 992.892 kb on - strand, within Dshi_0971at 992.897 kb on - strand, within Dshi_0971at 993.007 kb on + strand, within Dshi_0971at 993.104 kb on - strand, within Dshi_0971at 993.222 kb on - strand, within Dshi_0971at 993.324 kb on - strand, within Dshi_0971at 993.373 kb on + strandat 993.408 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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990,996 - Dshi_0969 0.37 +1.2
991,086 - Dshi_0969 0.43 -0.2
991,286 + Dshi_0969 0.56 -0.3
991,313 - Dshi_0969 0.58 -0.6
991,315 + Dshi_0969 0.58 -2.3
991,511 + Dshi_0969 0.71 -0.3
991,749 + Dshi_0969 0.87 +0.2
991,813 + +0.6
991,873 + -1.7
991,909 + -1.9
991,968 + +0.7
991,984 + -0.8
992,010 - Dshi_0970 0.15 -1.5
992,012 + Dshi_0970 0.16 -1.3
992,046 - Dshi_0970 0.23 -0.8
992,090 - Dshi_0970 0.32 -0.3
992,171 + Dshi_0970 0.48 -0.1
992,183 + Dshi_0970 0.50 -0.7
992,220 - Dshi_0970 0.58 -0.1
992,263 - Dshi_0970 0.67 -1.2
992,326 - Dshi_0970 0.79 -0.8
992,347 - Dshi_0970 0.84 -0.5
992,614 + Dshi_0971 0.18 -1.3
992,636 - Dshi_0971 0.20 -1.0
992,849 - Dshi_0971 0.41 +0.1
992,853 + Dshi_0971 0.41 +0.7
992,863 + Dshi_0971 0.42 -0.5
992,864 + Dshi_0971 0.42 -1.9
992,892 - Dshi_0971 0.45 -0.1
992,897 - Dshi_0971 0.46 -0.3
993,007 + Dshi_0971 0.57 +0.2
993,104 - Dshi_0971 0.66 -0.5
993,222 - Dshi_0971 0.78 +0.1
993,324 - Dshi_0971 0.88 +0.2
993,373 + +0.1
993,408 - -0.2

Or see this region's nucleotide sequence