Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0899 and Dshi_0900 are separated by 14 nucleotides Dshi_0900 and Dshi_0901 are separated by 4 nucleotides Dshi_0901 and Dshi_0902 overlap by 4 nucleotides
Dshi_0899: Dshi_0899 - hypothetical protein (RefSeq), at 921,315 to 922,355
_0899
Dshi_0900: Dshi_0900 - hypothetical protein (RefSeq), at 922,370 to 924,292
_0900
Dshi_0901: Dshi_0901 - ABC transporter related (RefSeq), at 924,297 to 925,022
_0901
Dshi_0902: Dshi_0902 - protein of unknown function DUF214 (RefSeq), at 925,019 to 926,218
_0902
Position (kb) 922
923
924
925 Strain fitness (log2 ratio) -1
0
1
2
3 at 921.577 kb on - strand, within Dshi_0899 at 921.607 kb on + strand, within Dshi_0899 at 921.864 kb on - strand, within Dshi_0899 at 921.866 kb on + strand, within Dshi_0899 at 921.874 kb on - strand at 922.016 kb on + strand, within Dshi_0899 at 922.033 kb on + strand, within Dshi_0899 at 922.088 kb on + strand, within Dshi_0899 at 922.155 kb on + strand, within Dshi_0899 at 922.163 kb on - strand, within Dshi_0899 at 922.262 kb on + strand at 922.294 kb on + strand at 922.317 kb on - strand at 922.372 kb on - strand at 922.387 kb on + strand at 922.490 kb on + strand at 922.521 kb on - strand at 922.540 kb on - strand at 922.634 kb on - strand, within Dshi_0900 at 922.693 kb on - strand, within Dshi_0900 at 922.757 kb on - strand, within Dshi_0900 at 922.887 kb on - strand, within Dshi_0900 at 923.027 kb on - strand, within Dshi_0900 at 923.068 kb on + strand, within Dshi_0900 at 923.068 kb on + strand, within Dshi_0900 at 923.113 kb on + strand, within Dshi_0900 at 923.143 kb on + strand, within Dshi_0900 at 923.296 kb on - strand, within Dshi_0900 at 923.319 kb on + strand, within Dshi_0900 at 923.473 kb on + strand, within Dshi_0900 at 923.559 kb on + strand, within Dshi_0900 at 923.582 kb on - strand, within Dshi_0900 at 923.646 kb on - strand, within Dshi_0900 at 923.918 kb on - strand, within Dshi_0900 at 923.989 kb on + strand, within Dshi_0900 at 924.040 kb on + strand, within Dshi_0900 at 924.217 kb on + strand at 924.432 kb on + strand, within Dshi_0901 at 924.666 kb on + strand, within Dshi_0901 at 924.673 kb on - strand, within Dshi_0901 at 924.731 kb on + strand, within Dshi_0901 at 924.774 kb on - strand, within Dshi_0901 at 924.886 kb on - strand, within Dshi_0901 at 924.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 921,577 - Dshi_0899 0.25 +0.8 921,607 + Dshi_0899 0.28 +0.7 921,864 - Dshi_0899 0.53 +1.5 921,866 + Dshi_0899 0.53 -0.0 921,874 - +1.1 922,016 + Dshi_0899 0.67 +1.0 922,033 + Dshi_0899 0.69 -0.3 922,088 + Dshi_0899 0.74 +1.0 922,155 + Dshi_0899 0.81 +1.2 922,163 - Dshi_0899 0.81 +0.8 922,262 + +0.7 922,294 + +2.8 922,317 - +0.7 922,372 - +1.5 922,387 + +1.4 922,490 + +1.7 922,521 - -1.7 922,540 - -0.4 922,634 - Dshi_0900 0.14 +1.7 922,693 - Dshi_0900 0.17 -0.2 922,757 - Dshi_0900 0.20 +2.7 922,887 - Dshi_0900 0.27 +1.7 923,027 - Dshi_0900 0.34 +1.6 923,068 + Dshi_0900 0.36 +1.9 923,068 + Dshi_0900 0.36 -0.5 923,113 + Dshi_0900 0.39 +0.9 923,143 + Dshi_0900 0.40 +0.7 923,296 - Dshi_0900 0.48 +1.2 923,319 + Dshi_0900 0.49 +1.0 923,473 + Dshi_0900 0.57 +0.2 923,559 + Dshi_0900 0.62 +1.1 923,582 - Dshi_0900 0.63 +1.3 923,646 - Dshi_0900 0.66 +1.5 923,918 - Dshi_0900 0.80 +0.9 923,989 + Dshi_0900 0.84 +2.0 924,040 + Dshi_0900 0.87 +2.5 924,217 + +2.1 924,432 + Dshi_0901 0.19 +1.4 924,666 + Dshi_0901 0.51 -0.0 924,673 - Dshi_0901 0.52 +0.2 924,731 + Dshi_0901 0.60 +0.9 924,774 - Dshi_0901 0.66 +1.4 924,886 - Dshi_0901 0.81 +1.4 924,993 - +0.8
Or see this region's nucleotide sequence