Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3323

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3320 and DVU3322 are separated by 269 nucleotidesDVU3322 and DVU3323 overlap by 4 nucleotidesDVU3323 and DVU3324 are separated by 219 nucleotidesDVU3324 and DVU3325 are separated by 79 nucleotides DVU3320: DVU3320 - conserved domain protein (TIGR), at 3,498,575 to 3,498,955 DVU3320 DVU3322: DVU3322 - conserved domain protein (TIGR), at 3,499,225 to 3,499,683 DVU3322 DVU3323: DVU3323 - ABC transporter, permease protein (TIGR), at 3,499,680 to 3,501,146 DVU3323 DVU3324: DVU3324 - ABC transporter, ATP-binding protein (TIGR), at 3,501,366 to 3,502,031 DVU3324 DVU3325: DVU3325 - hypothetical protein (TIGR), at 3,502,111 to 3,502,167 DVU3325 Position (kb) 3499 3500 3501 3502Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3498.722 kb on + strand, within DVU3320at 3498.760 kb on + strand, within DVU3320at 3498.792 kb on + strand, within DVU3320at 3498.814 kb on + strand, within DVU3320at 3498.814 kb on + strand, within DVU3320at 3498.906 kb on + strand, within DVU3320at 3498.906 kb on + strand, within DVU3320at 3498.906 kb on + strand, within DVU3320at 3498.914 kb on - strand, within DVU3320at 3499.022 kb on + strandat 3499.179 kb on - strandat 3499.181 kb on + strandat 3499.208 kb on - strandat 3499.287 kb on - strand, within DVU3322at 3499.381 kb on + strand, within DVU3322at 3499.474 kb on + strand, within DVU3322at 3499.474 kb on - strand, within DVU3322at 3499.504 kb on - strand, within DVU3322at 3499.741 kb on + strandat 3499.758 kb on - strandat 3499.801 kb on - strandat 3499.847 kb on + strand, within DVU3323at 3499.914 kb on + strand, within DVU3323at 3499.943 kb on - strand, within DVU3323at 3499.943 kb on - strand, within DVU3323at 3499.948 kb on - strand, within DVU3323at 3500.027 kb on - strand, within DVU3323at 3500.088 kb on + strand, within DVU3323at 3500.170 kb on + strand, within DVU3323at 3500.176 kb on - strand, within DVU3323at 3500.204 kb on + strand, within DVU3323at 3500.204 kb on + strand, within DVU3323at 3500.212 kb on - strand, within DVU3323at 3500.216 kb on + strand, within DVU3323at 3500.221 kb on + strand, within DVU3323at 3500.221 kb on + strand, within DVU3323at 3500.221 kb on + strand, within DVU3323at 3500.229 kb on - strand, within DVU3323at 3500.229 kb on - strand, within DVU3323at 3500.229 kb on - strand, within DVU3323at 3500.279 kb on + strand, within DVU3323at 3500.344 kb on + strand, within DVU3323at 3500.367 kb on + strand, within DVU3323at 3500.484 kb on + strand, within DVU3323at 3500.493 kb on - strand, within DVU3323at 3500.534 kb on + strand, within DVU3323at 3500.580 kb on + strand, within DVU3323at 3500.609 kb on + strand, within DVU3323at 3500.636 kb on + strand, within DVU3323at 3500.719 kb on + strand, within DVU3323at 3500.719 kb on + strand, within DVU3323at 3500.719 kb on + strand, within DVU3323at 3500.732 kb on + strand, within DVU3323at 3500.759 kb on - strand, within DVU3323at 3500.808 kb on - strand, within DVU3323at 3500.816 kb on - strand, within DVU3323at 3500.869 kb on + strand, within DVU3323at 3500.925 kb on - strand, within DVU3323at 3500.927 kb on + strand, within DVU3323at 3500.970 kb on - strand, within DVU3323at 3500.970 kb on - strand, within DVU3323at 3501.015 kb on + strandat 3501.040 kb on - strandat 3501.063 kb on + strandat 3501.147 kb on + strandat 3501.155 kb on - strandat 3501.155 kb on - strandat 3501.155 kb on - strandat 3501.157 kb on + strandat 3501.186 kb on - strandat 3501.191 kb on + strandat 3501.204 kb on - strandat 3501.221 kb on + strandat 3501.227 kb on + strandat 3501.259 kb on + strandat 3501.345 kb on - strandat 3501.372 kb on + strandat 3501.415 kb on + strandat 3501.415 kb on + strandat 3501.423 kb on + strandat 3501.423 kb on - strandat 3501.423 kb on - strandat 3501.423 kb on - strandat 3501.423 kb on - strandat 3501.425 kb on + strandat 3501.433 kb on - strand, within DVU3324at 3501.511 kb on - strand, within DVU3324at 3501.556 kb on - strand, within DVU3324at 3501.558 kb on + strand, within DVU3324at 3501.566 kb on - strand, within DVU3324at 3501.635 kb on + strand, within DVU3324at 3501.648 kb on + strand, within DVU3324at 3501.702 kb on - strand, within DVU3324at 3501.738 kb on + strand, within DVU3324at 3501.852 kb on - strand, within DVU3324at 3501.878 kb on + strand, within DVU3324at 3501.926 kb on + strand, within DVU3324at 3501.931 kb on + strand, within DVU3324at 3501.936 kb on + strand, within DVU3324at 3501.954 kb on + strand, within DVU3324at 3501.962 kb on - strand, within DVU3324at 3501.962 kb on - strand, within DVU3324at 3502.016 kb on + strandat 3502.056 kb on - strandat 3502.114 kb on - strandat 3502.129 kb on + strand, within DVU3325at 3502.137 kb on - strand, within DVU3325

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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3,498,722 + DVU3320 0.39 -0.2
3,498,760 + DVU3320 0.49 -0.0
3,498,792 + DVU3320 0.57 -2.6
3,498,814 + DVU3320 0.63 -0.2
3,498,814 + DVU3320 0.63 +0.0
3,498,906 + DVU3320 0.87 -0.1
3,498,906 + DVU3320 0.87 -0.1
3,498,906 + DVU3320 0.87 -0.1
3,498,914 - DVU3320 0.89 -2.8
3,499,022 + -0.0
3,499,179 - -0.1
3,499,181 + -0.5
3,499,208 - -1.1
3,499,287 - DVU3322 0.14 +0.3
3,499,381 + DVU3322 0.34 -0.0
3,499,474 + DVU3322 0.54 +0.1
3,499,474 - DVU3322 0.54 +0.7
3,499,504 - DVU3322 0.61 -0.6
3,499,741 + -1.8
3,499,758 - +1.2
3,499,801 - -0.3
3,499,847 + DVU3323 0.11 -0.1
3,499,914 + DVU3323 0.16 +0.6
3,499,943 - DVU3323 0.18 -3.9
3,499,943 - DVU3323 0.18 -0.1
3,499,948 - DVU3323 0.18 +0.7
3,500,027 - DVU3323 0.24 +0.5
3,500,088 + DVU3323 0.28 +1.3
3,500,170 + DVU3323 0.33 -0.2
3,500,176 - DVU3323 0.34 -1.3
3,500,204 + DVU3323 0.36 +0.0
3,500,204 + DVU3323 0.36 +0.6
3,500,212 - DVU3323 0.36 +0.1
3,500,216 + DVU3323 0.37 +0.5
3,500,221 + DVU3323 0.37 +0.8
3,500,221 + DVU3323 0.37 -0.3
3,500,221 + DVU3323 0.37 -3.0
3,500,229 - DVU3323 0.37 +1.2
3,500,229 - DVU3323 0.37 +1.3
3,500,229 - DVU3323 0.37 +0.2
3,500,279 + DVU3323 0.41 -0.1
3,500,344 + DVU3323 0.45 -3.9
3,500,367 + DVU3323 0.47 +1.0
3,500,484 + DVU3323 0.55 +1.5
3,500,493 - DVU3323 0.55 -0.2
3,500,534 + DVU3323 0.58 -0.2
3,500,580 + DVU3323 0.61 -0.4
3,500,609 + DVU3323 0.63 -2.1
3,500,636 + DVU3323 0.65 -0.0
3,500,719 + DVU3323 0.71 -0.1
3,500,719 + DVU3323 0.71 +0.0
3,500,719 + DVU3323 0.71 +0.5
3,500,732 + DVU3323 0.72 +0.0
3,500,759 - DVU3323 0.74 +0.3
3,500,808 - DVU3323 0.77 +0.2
3,500,816 - DVU3323 0.77 -0.2
3,500,869 + DVU3323 0.81 +0.7
3,500,925 - DVU3323 0.85 +0.4
3,500,927 + DVU3323 0.85 +0.9
3,500,970 - DVU3323 0.88 -2.6
3,500,970 - DVU3323 0.88 -0.0
3,501,015 + -0.4
3,501,040 - +0.2
3,501,063 + +0.0
3,501,147 + -0.7
3,501,155 - +0.5
3,501,155 - -0.3
3,501,155 - -0.1
3,501,157 + +0.2
3,501,186 - -0.7
3,501,191 + +0.2
3,501,204 - +1.9
3,501,221 + -0.4
3,501,227 + -0.3
3,501,259 + -0.4
3,501,345 - +0.3
3,501,372 + +0.3
3,501,415 + -0.0
3,501,415 + +0.3
3,501,423 + +0.2
3,501,423 - +0.0
3,501,423 - -3.1
3,501,423 - -0.6
3,501,423 - +0.4
3,501,425 + +0.1
3,501,433 - DVU3324 0.10 +0.3
3,501,511 - DVU3324 0.22 -3.3
3,501,556 - DVU3324 0.29 -2.8
3,501,558 + DVU3324 0.29 +1.1
3,501,566 - DVU3324 0.30 -0.4
3,501,635 + DVU3324 0.40 +1.0
3,501,648 + DVU3324 0.42 +0.2
3,501,702 - DVU3324 0.50 -0.3
3,501,738 + DVU3324 0.56 +0.4
3,501,852 - DVU3324 0.73 -0.1
3,501,878 + DVU3324 0.77 +0.8
3,501,926 + DVU3324 0.84 -0.6
3,501,931 + DVU3324 0.85 -3.1
3,501,936 + DVU3324 0.86 +0.8
3,501,954 + DVU3324 0.88 +0.5
3,501,962 - DVU3324 0.89 -0.2
3,501,962 - DVU3324 0.89 +0.1
3,502,016 + -2.7
3,502,056 - -0.7
3,502,114 - -0.1
3,502,129 + DVU3325 0.32 -1.4
3,502,137 - DVU3325 0.46 +0.1

Or see this region's nucleotide sequence