Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2770

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnikK and DVU2770 are separated by 109 nucleotidesDVU2770 and DVU2771 are separated by 11 nucleotides DVU2769: nikK - additional component of nickel ABC transporter (Dmitry Rodionov), at 2,876,621 to 2,877,403 nikK DVU2770: DVU2770 - response regulator (TIGR), at 2,877,513 to 2,877,911 DVU2770 DVU2771: DVU2771 - conserved hypothetical protein (TIGR), at 2,877,923 to 2,878,888 DVU2771 Position (kb) 2877 2878Strain fitness (log2 ratio) -3 -2 -1 0 1at 2876.617 kb on - strandat 2876.706 kb on - strand, within nikKat 2876.733 kb on - strand, within nikKat 2876.747 kb on + strand, within nikKat 2876.780 kb on + strand, within nikKat 2876.781 kb on + strand, within nikKat 2876.884 kb on + strand, within nikKat 2876.969 kb on + strand, within nikKat 2877.138 kb on - strand, within nikKat 2877.175 kb on + strand, within nikKat 2877.206 kb on + strand, within nikKat 2877.213 kb on + strand, within nikKat 2877.315 kb on + strand, within nikKat 2877.323 kb on - strand, within nikKat 2877.348 kb on - strandat 2877.509 kb on - strandat 2877.597 kb on + strand, within DVU2770at 2877.626 kb on + strand, within DVU2770at 2877.781 kb on - strand, within DVU2770at 2877.848 kb on + strand, within DVU2770at 2877.856 kb on - strand, within DVU2770at 2877.905 kb on + strandat 2877.905 kb on + strandat 2877.907 kb on + strandat 2877.922 kb on + strandat 2877.962 kb on - strandat 2878.100 kb on + strand, within DVU2771at 2878.408 kb on - strand, within DVU2771at 2878.496 kb on - strand, within DVU2771at 2878.511 kb on - strand, within DVU2771at 2878.511 kb on - strand, within DVU2771at 2878.559 kb on + strand, within DVU2771at 2878.604 kb on - strand, within DVU2771at 2878.670 kb on + strand, within DVU2771at 2878.683 kb on + strand, within DVU2771at 2878.699 kb on - strand, within DVU2771at 2878.787 kb on - strand, within DVU2771at 2878.812 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,876,617 - -0.2
2,876,706 - nikK DVU2769 0.11 -0.3
2,876,733 - nikK DVU2769 0.14 -2.8
2,876,747 + nikK DVU2769 0.16 -0.4
2,876,780 + nikK DVU2769 0.20 -0.1
2,876,781 + nikK DVU2769 0.20 -0.3
2,876,884 + nikK DVU2769 0.34 -2.4
2,876,969 + nikK DVU2769 0.44 -1.2
2,877,138 - nikK DVU2769 0.66 -0.4
2,877,175 + nikK DVU2769 0.71 +0.2
2,877,206 + nikK DVU2769 0.75 -3.1
2,877,213 + nikK DVU2769 0.76 +0.0
2,877,315 + nikK DVU2769 0.89 +0.4
2,877,323 - nikK DVU2769 0.90 -0.1
2,877,348 - -0.3
2,877,509 - -0.6
2,877,597 + DVU2770 0.21 -0.3
2,877,626 + DVU2770 0.28 -0.1
2,877,781 - DVU2770 0.67 -0.5
2,877,848 + DVU2770 0.84 -0.7
2,877,856 - DVU2770 0.86 -2.8
2,877,905 + +0.1
2,877,905 + -1.4
2,877,907 + -0.3
2,877,922 + -0.0
2,877,962 - -0.1
2,878,100 + DVU2771 0.18 -2.4
2,878,408 - DVU2771 0.50 +0.2
2,878,496 - DVU2771 0.59 +0.0
2,878,511 - DVU2771 0.61 -0.4
2,878,511 - DVU2771 0.61 -0.2
2,878,559 + DVU2771 0.66 -0.2
2,878,604 - DVU2771 0.70 -0.3
2,878,670 + DVU2771 0.77 +0.0
2,878,683 + DVU2771 0.79 -1.3
2,878,699 - DVU2771 0.80 -0.9
2,878,787 - DVU2771 0.89 +0.0
2,878,812 + -0.4

Or see this region's nucleotide sequence