Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2436

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcorA and DVU2436 are separated by 305 nucleotidesDVU2436 and DVU2437 are separated by 77 nucleotides DVU2435: corA - transporter, CorA family (TIGR), at 2,539,141 to 2,540,088 corA DVU2436: DVU2436 - conserved hypothetical protein (TIGR), at 2,540,394 to 2,541,026 DVU2436 DVU2437: DVU2437 - ABC transporter, permease protein (TIGR), at 2,541,104 to 2,542,324 DVU2437 Position (kb) 2540 2541 2542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2539.416 kb on + strand, within corAat 2539.470 kb on + strand, within corAat 2539.486 kb on + strand, within corAat 2539.494 kb on - strand, within corAat 2539.519 kb on - strand, within corAat 2539.609 kb on - strand, within corAat 2539.611 kb on + strand, within corAat 2539.619 kb on + strand, within corAat 2539.729 kb on + strand, within corAat 2539.803 kb on + strand, within corAat 2539.811 kb on - strand, within corAat 2539.820 kb on + strand, within corAat 2539.873 kb on - strand, within corAat 2540.025 kb on - strandat 2540.060 kb on - strandat 2540.279 kb on - strandat 2540.338 kb on + strandat 2540.338 kb on + strandat 2540.346 kb on - strandat 2540.346 kb on - strandat 2540.386 kb on - strandat 2540.392 kb on + strandat 2540.480 kb on - strand, within DVU2436at 2540.528 kb on - strand, within DVU2436at 2540.556 kb on + strand, within DVU2436at 2540.732 kb on - strand, within DVU2436at 2540.813 kb on - strand, within DVU2436at 2540.910 kb on + strand, within DVU2436at 2540.966 kb on - strandat 2540.986 kb on - strandat 2541.106 kb on + strandat 2541.167 kb on - strandat 2541.230 kb on + strand, within DVU2437at 2541.239 kb on - strand, within DVU2437at 2541.291 kb on - strand, within DVU2437at 2541.318 kb on + strand, within DVU2437at 2541.326 kb on - strand, within DVU2437at 2541.377 kb on + strand, within DVU2437at 2541.385 kb on - strand, within DVU2437at 2541.388 kb on + strand, within DVU2437at 2541.388 kb on + strand, within DVU2437at 2541.392 kb on - strand, within DVU2437at 2541.396 kb on - strand, within DVU2437at 2541.446 kb on - strand, within DVU2437at 2541.493 kb on + strand, within DVU2437at 2541.522 kb on - strand, within DVU2437at 2541.713 kb on - strand, within DVU2437at 2541.748 kb on - strand, within DVU2437at 2541.770 kb on + strand, within DVU2437at 2541.806 kb on + strand, within DVU2437at 2541.927 kb on + strand, within DVU2437at 2541.927 kb on + strand, within DVU2437at 2541.935 kb on - strand, within DVU2437at 2542.018 kb on + strand, within DVU2437

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,539,416 + corA DVU2435 0.29 +0.2
2,539,470 + corA DVU2435 0.35 +0.5
2,539,486 + corA DVU2435 0.36 +0.2
2,539,494 - corA DVU2435 0.37 -0.1
2,539,519 - corA DVU2435 0.40 +0.1
2,539,609 - corA DVU2435 0.49 -0.7
2,539,611 + corA DVU2435 0.50 -0.2
2,539,619 + corA DVU2435 0.50 -0.8
2,539,729 + corA DVU2435 0.62 -0.8
2,539,803 + corA DVU2435 0.70 +0.2
2,539,811 - corA DVU2435 0.71 -0.1
2,539,820 + corA DVU2435 0.72 +0.2
2,539,873 - corA DVU2435 0.77 -0.6
2,540,025 - -0.9
2,540,060 - +0.9
2,540,279 - -0.2
2,540,338 + -0.2
2,540,338 + -0.0
2,540,346 - -0.3
2,540,346 - -0.3
2,540,386 - -0.2
2,540,392 + -0.1
2,540,480 - DVU2436 0.14 -0.3
2,540,528 - DVU2436 0.21 +0.1
2,540,556 + DVU2436 0.26 +0.7
2,540,732 - DVU2436 0.53 -2.6
2,540,813 - DVU2436 0.66 -4.0
2,540,910 + DVU2436 0.82 +0.1
2,540,966 - -1.1
2,540,986 - -0.8
2,541,106 + -0.1
2,541,167 - +0.5
2,541,230 + DVU2437 0.10 -2.6
2,541,239 - DVU2437 0.11 +0.1
2,541,291 - DVU2437 0.15 -0.4
2,541,318 + DVU2437 0.18 -0.6
2,541,326 - DVU2437 0.18 +0.2
2,541,377 + DVU2437 0.22 +1.0
2,541,385 - DVU2437 0.23 +1.0
2,541,388 + DVU2437 0.23 -0.6
2,541,388 + DVU2437 0.23 -1.6
2,541,392 - DVU2437 0.24 +0.3
2,541,396 - DVU2437 0.24 +0.0
2,541,446 - DVU2437 0.28 +0.3
2,541,493 + DVU2437 0.32 +0.0
2,541,522 - DVU2437 0.34 +0.7
2,541,713 - DVU2437 0.50 -0.8
2,541,748 - DVU2437 0.53 -0.1
2,541,770 + DVU2437 0.55 -0.3
2,541,806 + DVU2437 0.57 -2.0
2,541,927 + DVU2437 0.67 +0.5
2,541,927 + DVU2437 0.67 +0.6
2,541,935 - DVU2437 0.68 +0.6
2,542,018 + DVU2437 0.75 -3.0

Or see this region's nucleotide sequence