Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2394

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF41366 and ntrC1 are separated by 246 nucleotidesntrC1 and DVU2395 are separated by 5 nucleotides DORF41366: DORF41366 - SEED: FIG00607184: hypothetical protein, at 2,494,623 to 2,496,719 DORF41366 DVU2394: ntrC1 - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 2,496,966 to 2,498,357 ntrC1 DVU2395: DVU2395 - sensor histidine kinase (TIGR), at 2,498,363 to 2,499,619 DVU2395 Position (kb) 2496 2497 2498 2499Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2496.041 kb on + strand, within DORF41366at 2496.049 kb on - strand, within DORF41366at 2496.056 kb on + strand, within DORF41366at 2496.090 kb on - strand, within DORF41366at 2496.126 kb on + strand, within DORF41366at 2496.201 kb on - strand, within DORF41366at 2496.468 kb on - strand, within DORF41366at 2496.550 kb on + strandat 2496.584 kb on - strandat 2496.596 kb on + strandat 2496.642 kb on + strandat 2496.642 kb on + strandat 2496.650 kb on - strandat 2496.698 kb on - strandat 2496.757 kb on + strandat 2496.786 kb on - strandat 2496.786 kb on - strandat 2496.822 kb on + strandat 2496.910 kb on - strandat 2497.077 kb on + strandat 2497.143 kb on + strand, within ntrC1at 2497.319 kb on - strand, within ntrC1at 2497.414 kb on - strand, within ntrC1at 2497.449 kb on + strand, within ntrC1at 2497.449 kb on + strand, within ntrC1at 2497.457 kb on - strand, within ntrC1at 2497.594 kb on - strand, within ntrC1at 2497.658 kb on + strand, within ntrC1at 2497.728 kb on + strand, within ntrC1at 2497.736 kb on - strand, within ntrC1at 2497.736 kb on - strand, within ntrC1at 2497.826 kb on - strand, within ntrC1at 2497.933 kb on - strand, within ntrC1at 2498.223 kb on + strandat 2498.341 kb on + strandat 2498.402 kb on + strandat 2498.403 kb on - strandat 2498.500 kb on - strand, within DVU2395at 2498.570 kb on - strand, within DVU2395at 2498.595 kb on + strand, within DVU2395at 2498.790 kb on - strand, within DVU2395at 2498.828 kb on + strand, within DVU2395at 2498.951 kb on + strand, within DVU2395at 2499.000 kb on - strand, within DVU2395at 2499.000 kb on - strand, within DVU2395at 2499.080 kb on - strand, within DVU2395at 2499.099 kb on - strand, within DVU2395at 2499.102 kb on + strand, within DVU2395at 2499.141 kb on - strand, within DVU2395at 2499.290 kb on - strand, within DVU2395at 2499.335 kb on - strand, within DVU2395at 2499.341 kb on - strand, within DVU2395

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,496,041 + DORF41366 0.68 +0.0
2,496,049 - DORF41366 0.68 -0.1
2,496,056 + DORF41366 0.68 +1.3
2,496,090 - DORF41366 0.70 +1.4
2,496,126 + DORF41366 0.72 +0.5
2,496,201 - DORF41366 0.75 -1.0
2,496,468 - DORF41366 0.88 +1.0
2,496,550 + -0.1
2,496,584 - -0.6
2,496,596 + +0.5
2,496,642 + +0.1
2,496,642 + -0.2
2,496,650 - -2.8
2,496,698 - -0.0
2,496,757 + +0.3
2,496,786 - -0.1
2,496,786 - -0.1
2,496,822 + -4.1
2,496,910 - -3.1
2,497,077 + -3.1
2,497,143 + ntrC1 DVU2394 0.13 -2.1
2,497,319 - ntrC1 DVU2394 0.25 -1.7
2,497,414 - ntrC1 DVU2394 0.32 -0.1
2,497,449 + ntrC1 DVU2394 0.35 +0.6
2,497,449 + ntrC1 DVU2394 0.35 -1.0
2,497,457 - ntrC1 DVU2394 0.35 +0.3
2,497,594 - ntrC1 DVU2394 0.45 -5.2
2,497,658 + ntrC1 DVU2394 0.50 -3.2
2,497,728 + ntrC1 DVU2394 0.55 -2.5
2,497,736 - ntrC1 DVU2394 0.55 -0.5
2,497,736 - ntrC1 DVU2394 0.55 -0.1
2,497,826 - ntrC1 DVU2394 0.62 +0.3
2,497,933 - ntrC1 DVU2394 0.69 -0.0
2,498,223 + +0.7
2,498,341 + +0.3
2,498,402 + +1.2
2,498,403 - -2.9
2,498,500 - DVU2395 0.11 +0.8
2,498,570 - DVU2395 0.16 -3.4
2,498,595 + DVU2395 0.18 -1.0
2,498,790 - DVU2395 0.34 -1.2
2,498,828 + DVU2395 0.37 -0.7
2,498,951 + DVU2395 0.47 -3.1
2,499,000 - DVU2395 0.51 -0.1
2,499,000 - DVU2395 0.51 +0.8
2,499,080 - DVU2395 0.57 +1.3
2,499,099 - DVU2395 0.59 +0.1
2,499,102 + DVU2395 0.59 -1.3
2,499,141 - DVU2395 0.62 +0.7
2,499,290 - DVU2395 0.74 +0.7
2,499,335 - DVU2395 0.77 -2.9
2,499,341 - DVU2395 0.78 +2.2

Or see this region's nucleotide sequence