Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2313

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF40861 and DVU2312 are separated by 33 nucleotidesDVU2312 and pgl are separated by 217 nucleotidespgl and DVU2315 are separated by 281 nucleotides DORF40861: DORF40861 - SEED: FIG00604452: hypothetical protein, at 2,404,636 to 2,405,895 DORF40861 DVU2312: DVU2312 - hypothetical protein (TIGR), at 2,405,929 to 2,406,396 DVU2312 DVU2313: pgl - 6-phosphogluconolactonase (TIGR), at 2,406,614 to 2,407,363 pgl DVU2315: DVU2315 - conserved hypothetical protein TIGR00257 (TIGR), at 2,407,645 to 2,408,373 DVU2315 Position (kb) 2406 2407 2408Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2405.640 kb on - strand, within DORF40861at 2405.775 kb on - strandat 2405.785 kb on - strandat 2405.802 kb on - strandat 2405.842 kb on - strandat 2405.852 kb on - strandat 2405.931 kb on + strandat 2405.954 kb on - strandat 2405.954 kb on - strandat 2406.024 kb on + strand, within DVU2312at 2406.132 kb on - strand, within DVU2312at 2406.136 kb on + strand, within DVU2312at 2406.166 kb on + strand, within DVU2312at 2406.216 kb on + strand, within DVU2312at 2406.308 kb on - strand, within DVU2312at 2406.331 kb on + strand, within DVU2312at 2406.336 kb on + strand, within DVU2312at 2406.399 kb on - strandat 2406.399 kb on - strandat 2406.466 kb on - strandat 2406.535 kb on - strandat 2406.716 kb on - strand, within pglat 2406.723 kb on - strand, within pglat 2406.759 kb on + strand, within pglat 2406.841 kb on - strand, within pglat 2406.856 kb on - strand, within pglat 2406.908 kb on - strand, within pglat 2407.004 kb on + strand, within pglat 2407.158 kb on - strand, within pglat 2407.164 kb on + strand, within pglat 2407.170 kb on + strand, within pglat 2407.170 kb on + strand, within pglat 2407.184 kb on + strand, within pglat 2407.401 kb on - strandat 2407.403 kb on + strandat 2407.478 kb on + strandat 2407.483 kb on + strandat 2407.500 kb on + strandat 2407.598 kb on + strandat 2407.657 kb on + strandat 2407.665 kb on - strandat 2407.673 kb on + strandat 2407.681 kb on - strandat 2407.681 kb on - strandat 2407.681 kb on - strandat 2407.681 kb on - strandat 2407.711 kb on - strandat 2407.755 kb on + strand, within DVU2315at 2407.763 kb on - strand, within DVU2315at 2407.770 kb on - strand, within DVU2315at 2408.037 kb on + strand, within DVU2315at 2408.083 kb on - strand, within DVU2315at 2408.134 kb on - strand, within DVU2315at 2408.172 kb on - strand, within DVU2315at 2408.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,405,640 - DORF40861 0.80 -3.5
2,405,775 - -0.7
2,405,785 - -0.4
2,405,802 - -0.2
2,405,842 - -0.2
2,405,852 - +0.2
2,405,931 + +0.2
2,405,954 - +0.5
2,405,954 - -3.5
2,406,024 + DVU2312 0.20 -0.3
2,406,132 - DVU2312 0.43 -0.7
2,406,136 + DVU2312 0.44 -0.1
2,406,166 + DVU2312 0.51 -0.4
2,406,216 + DVU2312 0.61 +0.1
2,406,308 - DVU2312 0.81 +0.3
2,406,331 + DVU2312 0.86 +0.5
2,406,336 + DVU2312 0.87 +0.0
2,406,399 - -0.1
2,406,399 - +0.2
2,406,466 - +0.3
2,406,535 - -0.3
2,406,716 - pgl DVU2313 0.14 +0.4
2,406,723 - pgl DVU2313 0.15 +0.3
2,406,759 + pgl DVU2313 0.19 -0.2
2,406,841 - pgl DVU2313 0.30 +0.9
2,406,856 - pgl DVU2313 0.32 -0.0
2,406,908 - pgl DVU2313 0.39 -0.9
2,407,004 + pgl DVU2313 0.52 -0.3
2,407,158 - pgl DVU2313 0.73 +0.5
2,407,164 + pgl DVU2313 0.73 -1.0
2,407,170 + pgl DVU2313 0.74 -0.3
2,407,170 + pgl DVU2313 0.74 +0.2
2,407,184 + pgl DVU2313 0.76 -2.6
2,407,401 - +0.1
2,407,403 + -0.2
2,407,478 + +0.3
2,407,483 + +1.8
2,407,500 + -0.9
2,407,598 + +1.0
2,407,657 + +0.4
2,407,665 - +0.7
2,407,673 + -1.1
2,407,681 - +0.8
2,407,681 - -0.7
2,407,681 - +0.1
2,407,681 - -0.2
2,407,711 - -3.1
2,407,755 + DVU2315 0.15 -0.4
2,407,763 - DVU2315 0.16 -0.1
2,407,770 - DVU2315 0.17 -0.0
2,408,037 + DVU2315 0.54 +0.6
2,408,083 - DVU2315 0.60 -0.2
2,408,134 - DVU2315 0.67 -0.0
2,408,172 - DVU2315 0.72 -0.6
2,408,359 - -0.7

Or see this region's nucleotide sequence