Experiment: MoLS4 with L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glgB and glgA overlap by 4 nucleotides glgA and DVU2245 are separated by 28 nucleotides
DVU2243: glgB - 1,4-alpha-glucan branching enzyme (TIGR), at 2,336,760 to 2,338,682
glgB
DVU2244: glgA - glycogen synthase (TIGR), at 2,338,679 to 2,340,148
glgA
DVU2245: DVU2245 - mutT/nudix family protein (TIGR), at 2,340,177 to 2,340,593
DVU2245
Position (kb)
2338
2339
2340
2341 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2337.689 kb on - strand, within glgB at 2337.709 kb on + strand, within glgB at 2337.717 kb on - strand, within glgB at 2337.741 kb on - strand, within glgB at 2337.743 kb on + strand, within glgB at 2337.784 kb on - strand, within glgB at 2337.865 kb on - strand, within glgB at 2337.905 kb on + strand, within glgB at 2337.938 kb on - strand, within glgB at 2338.032 kb on + strand, within glgB at 2338.051 kb on + strand, within glgB at 2338.059 kb on - strand, within glgB at 2338.090 kb on + strand, within glgB at 2338.107 kb on + strand, within glgB at 2338.115 kb on - strand, within glgB at 2338.120 kb on - strand, within glgB at 2338.301 kb on - strand, within glgB at 2338.307 kb on + strand, within glgB at 2338.548 kb on + strand at 2338.597 kb on + strand at 2338.611 kb on + strand at 2338.666 kb on - strand at 2338.713 kb on - strand at 2338.755 kb on + strand at 2338.760 kb on + strand at 2338.812 kb on + strand at 2338.867 kb on + strand, within glgA at 2338.922 kb on - strand, within glgA at 2338.973 kb on + strand, within glgA at 2338.973 kb on + strand, within glgA at 2338.978 kb on + strand, within glgA at 2339.061 kb on - strand, within glgA at 2339.070 kb on - strand, within glgA at 2339.104 kb on + strand, within glgA at 2339.104 kb on + strand, within glgA at 2339.104 kb on + strand, within glgA at 2339.104 kb on + strand, within glgA at 2339.112 kb on - strand, within glgA at 2339.112 kb on - strand, within glgA at 2339.170 kb on + strand, within glgA at 2339.266 kb on + strand, within glgA at 2339.274 kb on - strand, within glgA at 2339.295 kb on + strand, within glgA at 2339.321 kb on + strand, within glgA at 2339.396 kb on - strand, within glgA at 2339.531 kb on - strand, within glgA at 2339.533 kb on + strand, within glgA at 2339.541 kb on - strand, within glgA at 2339.559 kb on - strand, within glgA at 2339.576 kb on - strand, within glgA at 2339.576 kb on - strand, within glgA at 2339.644 kb on - strand, within glgA at 2339.651 kb on - strand, within glgA at 2339.746 kb on + strand, within glgA at 2339.748 kb on + strand, within glgA at 2339.754 kb on - strand, within glgA at 2339.756 kb on - strand, within glgA at 2339.766 kb on - strand, within glgA at 2339.795 kb on + strand, within glgA at 2340.040 kb on + strand at 2340.058 kb on - strand at 2340.058 kb on - strand at 2340.077 kb on - strand at 2340.377 kb on + strand, within DVU2245 at 2340.409 kb on - strand, within DVU2245 at 2340.413 kb on + strand, within DVU2245 at 2340.422 kb on - strand, within DVU2245 at 2340.622 kb on + strand at 2340.630 kb on - strand at 2340.638 kb on + strand at 2340.670 kb on - strand at 2340.683 kb on + strand at 2340.726 kb on - strand at 2340.744 kb on + strand at 2340.744 kb on + strand at 2340.752 kb on - strand at 2340.786 kb on + strand at 2340.828 kb on + strand at 2340.839 kb on - strand at 2340.851 kb on + strand at 2340.887 kb on - strand at 2340.939 kb on - strand at 2341.003 kb on - strand at 2341.024 kb on + strand at 2341.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N) remove 2,337,689 - glgB DVU2243 0.48 -0.3 2,337,709 + glgB DVU2243 0.49 -0.1 2,337,717 - glgB DVU2243 0.50 -0.7 2,337,741 - glgB DVU2243 0.51 +0.3 2,337,743 + glgB DVU2243 0.51 +0.1 2,337,784 - glgB DVU2243 0.53 -0.1 2,337,865 - glgB DVU2243 0.57 -0.2 2,337,905 + glgB DVU2243 0.60 -2.3 2,337,938 - glgB DVU2243 0.61 -0.1 2,338,032 + glgB DVU2243 0.66 +1.2 2,338,051 + glgB DVU2243 0.67 +0.0 2,338,059 - glgB DVU2243 0.68 -3.7 2,338,090 + glgB DVU2243 0.69 -0.3 2,338,107 + glgB DVU2243 0.70 +0.3 2,338,115 - glgB DVU2243 0.70 -3.2 2,338,120 - glgB DVU2243 0.71 -3.2 2,338,301 - glgB DVU2243 0.80 -0.1 2,338,307 + glgB DVU2243 0.80 -2.9 2,338,548 + +0.3 2,338,597 + +0.0 2,338,611 + +0.2 2,338,666 - +1.1 2,338,713 - +0.2 2,338,755 + -0.7 2,338,760 + -3.5 2,338,812 + -1.6 2,338,867 + glgA DVU2244 0.13 +0.0 2,338,922 - glgA DVU2244 0.17 +0.2 2,338,973 + glgA DVU2244 0.20 -0.3 2,338,973 + glgA DVU2244 0.20 -0.8 2,338,978 + glgA DVU2244 0.20 -0.6 2,339,061 - glgA DVU2244 0.26 -0.0 2,339,070 - glgA DVU2244 0.27 -0.1 2,339,104 + glgA DVU2244 0.29 +0.3 2,339,104 + glgA DVU2244 0.29 -3.2 2,339,104 + glgA DVU2244 0.29 +1.2 2,339,104 + glgA DVU2244 0.29 +1.3 2,339,112 - glgA DVU2244 0.29 -0.6 2,339,112 - glgA DVU2244 0.29 -0.0 2,339,170 + glgA DVU2244 0.33 -0.1 2,339,266 + glgA DVU2244 0.40 +0.2 2,339,274 - glgA DVU2244 0.40 +0.1 2,339,295 + glgA DVU2244 0.42 -0.2 2,339,321 + glgA DVU2244 0.44 -0.8 2,339,396 - glgA DVU2244 0.49 -4.0 2,339,531 - glgA DVU2244 0.58 +0.2 2,339,533 + glgA DVU2244 0.58 +0.3 2,339,541 - glgA DVU2244 0.59 +0.0 2,339,559 - glgA DVU2244 0.60 +0.1 2,339,576 - glgA DVU2244 0.61 -0.1 2,339,576 - glgA DVU2244 0.61 -0.1 2,339,644 - glgA DVU2244 0.66 -0.3 2,339,651 - glgA DVU2244 0.66 +0.7 2,339,746 + glgA DVU2244 0.73 -0.3 2,339,748 + glgA DVU2244 0.73 +0.2 2,339,754 - glgA DVU2244 0.73 +0.7 2,339,756 - glgA DVU2244 0.73 -0.7 2,339,766 - glgA DVU2244 0.74 -0.0 2,339,795 + glgA DVU2244 0.76 -0.4 2,340,040 + +1.0 2,340,058 - +0.9 2,340,058 - -0.6 2,340,077 - -3.5 2,340,377 + DVU2245 0.48 -3.3 2,340,409 - DVU2245 0.56 -0.7 2,340,413 + DVU2245 0.57 -2.5 2,340,422 - DVU2245 0.59 -0.2 2,340,622 + +0.2 2,340,630 - +0.1 2,340,638 + -0.5 2,340,670 - -1.1 2,340,683 + -4.1 2,340,726 - -0.2 2,340,744 + -0.9 2,340,744 + -0.2 2,340,752 - +1.8 2,340,786 + +0.8 2,340,828 + +1.3 2,340,839 - -0.4 2,340,851 + -0.1 2,340,887 - -0.6 2,340,939 - +0.0 2,341,003 - -0.0 2,341,024 + +0.4 2,341,044 + +0.4
Or see this region's nucleotide sequence