Experiment: MoLS4 with L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt typA and DVU2232 are separated by 435 nucleotides DVU2232 and DVU2233 are separated by 264 nucleotides
DVU2231: typA - GTP-binding protein TypA (TIGR), at 2,323,364 to 2,325,205
typA
DVU2232: DVU2232 - hypothetical protein (TIGR), at 2,325,641 to 2,326,009
DVU2232
DVU2233: DVU2233 - conserved hypothetical protein (TIGR), at 2,326,274 to 2,327,251
DVU2233
Position (kb)
2325
2326
2327 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2324.662 kb on - strand, within typA at 2324.730 kb on + strand, within typA at 2324.925 kb on - strand, within typA at 2324.943 kb on - strand, within typA at 2324.944 kb on - strand, within typA at 2325.022 kb on + strand at 2325.056 kb on - strand at 2325.111 kb on + strand at 2325.200 kb on + strand at 2325.200 kb on + strand at 2325.208 kb on - strand at 2325.219 kb on + strand at 2325.236 kb on + strand at 2325.236 kb on + strand at 2325.352 kb on - strand at 2325.639 kb on + strand at 2325.726 kb on - strand, within DVU2232 at 2325.753 kb on + strand, within DVU2232 at 2325.753 kb on + strand, within DVU2232 at 2325.761 kb on - strand, within DVU2232 at 2325.853 kb on - strand, within DVU2232 at 2325.937 kb on - strand, within DVU2232 at 2325.973 kb on - strand at 2325.988 kb on + strand at 2326.133 kb on + strand at 2326.272 kb on - strand at 2326.280 kb on - strand at 2326.289 kb on - strand at 2326.310 kb on - strand at 2326.314 kb on + strand at 2326.314 kb on + strand at 2326.383 kb on - strand, within DVU2233 at 2326.436 kb on + strand, within DVU2233 at 2326.436 kb on - strand, within DVU2233 at 2326.500 kb on + strand, within DVU2233 at 2326.515 kb on - strand, within DVU2233 at 2326.541 kb on + strand, within DVU2233 at 2326.559 kb on - strand, within DVU2233 at 2326.640 kb on - strand, within DVU2233 at 2326.735 kb on + strand, within DVU2233 at 2326.782 kb on - strand, within DVU2233 at 2326.847 kb on + strand, within DVU2233 at 2326.847 kb on + strand, within DVU2233 at 2326.861 kb on - strand, within DVU2233 at 2326.936 kb on - strand, within DVU2233 at 2326.962 kb on - strand, within DVU2233 at 2326.965 kb on + strand, within DVU2233 at 2327.005 kb on - strand, within DVU2233
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N) remove 2,324,662 - typA DVU2231 0.70 -0.9 2,324,730 + typA DVU2231 0.74 -2.6 2,324,925 - typA DVU2231 0.85 -0.8 2,324,943 - typA DVU2231 0.86 -0.6 2,324,944 - typA DVU2231 0.86 -0.7 2,325,022 + -0.2 2,325,056 - -0.6 2,325,111 + +0.6 2,325,200 + +0.1 2,325,200 + -3.2 2,325,208 - -0.2 2,325,219 + -0.0 2,325,236 + -0.1 2,325,236 + -1.6 2,325,352 - -0.5 2,325,639 + +0.2 2,325,726 - DVU2232 0.23 -2.7 2,325,753 + DVU2232 0.30 +0.2 2,325,753 + DVU2232 0.30 +0.0 2,325,761 - DVU2232 0.33 -0.7 2,325,853 - DVU2232 0.57 -2.8 2,325,937 - DVU2232 0.80 -0.2 2,325,973 - -0.3 2,325,988 + -0.2 2,326,133 + +0.1 2,326,272 - -0.4 2,326,280 - +0.2 2,326,289 - -0.3 2,326,310 - -0.4 2,326,314 + -0.2 2,326,314 + -3.1 2,326,383 - DVU2233 0.11 -2.6 2,326,436 + DVU2233 0.17 -0.0 2,326,436 - DVU2233 0.17 -0.3 2,326,500 + DVU2233 0.23 -0.4 2,326,515 - DVU2233 0.25 -3.8 2,326,541 + DVU2233 0.27 -0.1 2,326,559 - DVU2233 0.29 -3.3 2,326,640 - DVU2233 0.37 -3.0 2,326,735 + DVU2233 0.47 -0.7 2,326,782 - DVU2233 0.52 +0.5 2,326,847 + DVU2233 0.59 +0.7 2,326,847 + DVU2233 0.59 +0.5 2,326,861 - DVU2233 0.60 -0.5 2,326,936 - DVU2233 0.68 -0.2 2,326,962 - DVU2233 0.70 -0.2 2,326,965 + DVU2233 0.71 +0.8 2,327,005 - DVU2233 0.75 -0.4
Or see this region's nucleotide sequence