Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2232

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttypA and DVU2232 are separated by 435 nucleotidesDVU2232 and DVU2233 are separated by 264 nucleotides DVU2231: typA - GTP-binding protein TypA (TIGR), at 2,323,364 to 2,325,205 typA DVU2232: DVU2232 - hypothetical protein (TIGR), at 2,325,641 to 2,326,009 DVU2232 DVU2233: DVU2233 - conserved hypothetical protein (TIGR), at 2,326,274 to 2,327,251 DVU2233 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2324.662 kb on - strand, within typAat 2324.730 kb on + strand, within typAat 2324.925 kb on - strand, within typAat 2324.943 kb on - strand, within typAat 2324.944 kb on - strand, within typAat 2325.022 kb on + strandat 2325.056 kb on - strandat 2325.111 kb on + strandat 2325.200 kb on + strandat 2325.200 kb on + strandat 2325.208 kb on - strandat 2325.219 kb on + strandat 2325.236 kb on + strandat 2325.236 kb on + strandat 2325.352 kb on - strandat 2325.639 kb on + strandat 2325.726 kb on - strand, within DVU2232at 2325.753 kb on + strand, within DVU2232at 2325.753 kb on + strand, within DVU2232at 2325.761 kb on - strand, within DVU2232at 2325.853 kb on - strand, within DVU2232at 2325.937 kb on - strand, within DVU2232at 2325.973 kb on - strandat 2325.988 kb on + strandat 2326.133 kb on + strandat 2326.272 kb on - strandat 2326.280 kb on - strandat 2326.289 kb on - strandat 2326.310 kb on - strandat 2326.314 kb on + strandat 2326.314 kb on + strandat 2326.383 kb on - strand, within DVU2233at 2326.436 kb on + strand, within DVU2233at 2326.436 kb on - strand, within DVU2233at 2326.500 kb on + strand, within DVU2233at 2326.515 kb on - strand, within DVU2233at 2326.541 kb on + strand, within DVU2233at 2326.559 kb on - strand, within DVU2233at 2326.640 kb on - strand, within DVU2233at 2326.735 kb on + strand, within DVU2233at 2326.782 kb on - strand, within DVU2233at 2326.847 kb on + strand, within DVU2233at 2326.847 kb on + strand, within DVU2233at 2326.861 kb on - strand, within DVU2233at 2326.936 kb on - strand, within DVU2233at 2326.962 kb on - strand, within DVU2233at 2326.965 kb on + strand, within DVU2233at 2327.005 kb on - strand, within DVU2233

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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2,324,662 - typA DVU2231 0.70 -0.9
2,324,730 + typA DVU2231 0.74 -2.6
2,324,925 - typA DVU2231 0.85 -0.8
2,324,943 - typA DVU2231 0.86 -0.6
2,324,944 - typA DVU2231 0.86 -0.7
2,325,022 + -0.2
2,325,056 - -0.6
2,325,111 + +0.6
2,325,200 + +0.1
2,325,200 + -3.2
2,325,208 - -0.2
2,325,219 + -0.0
2,325,236 + -0.1
2,325,236 + -1.6
2,325,352 - -0.5
2,325,639 + +0.2
2,325,726 - DVU2232 0.23 -2.7
2,325,753 + DVU2232 0.30 +0.2
2,325,753 + DVU2232 0.30 +0.0
2,325,761 - DVU2232 0.33 -0.7
2,325,853 - DVU2232 0.57 -2.8
2,325,937 - DVU2232 0.80 -0.2
2,325,973 - -0.3
2,325,988 + -0.2
2,326,133 + +0.1
2,326,272 - -0.4
2,326,280 - +0.2
2,326,289 - -0.3
2,326,310 - -0.4
2,326,314 + -0.2
2,326,314 + -3.1
2,326,383 - DVU2233 0.11 -2.6
2,326,436 + DVU2233 0.17 -0.0
2,326,436 - DVU2233 0.17 -0.3
2,326,500 + DVU2233 0.23 -0.4
2,326,515 - DVU2233 0.25 -3.8
2,326,541 + DVU2233 0.27 -0.1
2,326,559 - DVU2233 0.29 -3.3
2,326,640 - DVU2233 0.37 -3.0
2,326,735 + DVU2233 0.47 -0.7
2,326,782 - DVU2233 0.52 +0.5
2,326,847 + DVU2233 0.59 +0.7
2,326,847 + DVU2233 0.59 +0.5
2,326,861 - DVU2233 0.60 -0.5
2,326,936 - DVU2233 0.68 -0.2
2,326,962 - DVU2233 0.70 -0.2
2,326,965 + DVU2233 0.71 +0.8
2,327,005 - DVU2233 0.75 -0.4

Or see this region's nucleotide sequence