Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1801

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF13417 and DORF13424 overlap by 23 nucleotidesDORF13424 and DVU1801 are separated by 82 nucleotidesDVU1801 and DVU1802 are separated by 209 nucleotides DORF13417: DORF13417 - SEED: FIG00603341: hypothetical protein, at 1,861,868 to 1,862,878 DORF13417 DORF13424: DORF13424 - no description, at 1,862,856 to 1,862,999 DORF13424 DVU1801: DVU1801 - hypothetical protein (TIGR), at 1,863,082 to 1,864,269 DVU1801 DVU1802: DVU1802 - conserved hypothetical protein (TIGR), at 1,864,479 to 1,865,339 DVU1802 Position (kb) 1863 1864 1865Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1862.909 kb on + strand, within DORF13424at 1863.070 kb on - strandat 1863.238 kb on - strand, within DVU1801at 1863.407 kb on - strand, within DVU1801at 1863.449 kb on + strand, within DVU1801at 1863.449 kb on + strand, within DVU1801at 1863.449 kb on + strand, within DVU1801at 1863.459 kb on + strand, within DVU1801at 1863.467 kb on - strand, within DVU1801at 1863.526 kb on - strand, within DVU1801at 1863.535 kb on - strand, within DVU1801at 1863.564 kb on + strand, within DVU1801at 1863.672 kb on - strand, within DVU1801at 1863.863 kb on - strand, within DVU1801at 1863.873 kb on + strand, within DVU1801at 1863.880 kb on + strand, within DVU1801at 1863.904 kb on - strand, within DVU1801at 1863.976 kb on + strand, within DVU1801at 1864.056 kb on - strand, within DVU1801at 1864.125 kb on - strand, within DVU1801at 1864.142 kb on - strand, within DVU1801at 1864.142 kb on - strand, within DVU1801at 1864.174 kb on - strandat 1864.247 kb on + strandat 1864.311 kb on + strandat 1864.311 kb on - strandat 1864.333 kb on - strandat 1864.427 kb on - strandat 1864.738 kb on + strand, within DVU1802at 1864.827 kb on + strand, within DVU1802at 1864.927 kb on - strand, within DVU1802at 1864.962 kb on + strand, within DVU1802at 1864.962 kb on + strand, within DVU1802at 1864.970 kb on - strand, within DVU1802at 1864.988 kb on + strand, within DVU1802at 1865.027 kb on + strand, within DVU1802at 1865.027 kb on + strand, within DVU1802at 1865.035 kb on - strand, within DVU1802at 1865.045 kb on - strand, within DVU1802at 1865.072 kb on - strand, within DVU1802at 1865.093 kb on + strand, within DVU1802at 1865.108 kb on + strand, within DVU1802at 1865.108 kb on + strand, within DVU1802at 1865.150 kb on - strand, within DVU1802at 1865.177 kb on + strand, within DVU1802at 1865.219 kb on + strand, within DVU1802at 1865.227 kb on - strand, within DVU1802at 1865.232 kb on + strand, within DVU1802

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,862,909 + DORF13424 0.37 +0.2
1,863,070 - -0.0
1,863,238 - DVU1801 0.13 -0.2
1,863,407 - DVU1801 0.27 -0.2
1,863,449 + DVU1801 0.31 +0.2
1,863,449 + DVU1801 0.31 -3.8
1,863,449 + DVU1801 0.31 -0.2
1,863,459 + DVU1801 0.32 -0.6
1,863,467 - DVU1801 0.32 -1.1
1,863,526 - DVU1801 0.37 -3.3
1,863,535 - DVU1801 0.38 -2.4
1,863,564 + DVU1801 0.41 -0.2
1,863,672 - DVU1801 0.50 -2.9
1,863,863 - DVU1801 0.66 -0.0
1,863,873 + DVU1801 0.67 -3.0
1,863,880 + DVU1801 0.67 -3.7
1,863,904 - DVU1801 0.69 -3.1
1,863,976 + DVU1801 0.75 -0.9
1,864,056 - DVU1801 0.82 -0.0
1,864,125 - DVU1801 0.88 -1.9
1,864,142 - DVU1801 0.89 -0.2
1,864,142 - DVU1801 0.89 +0.1
1,864,174 - +0.5
1,864,247 + -3.8
1,864,311 + +1.4
1,864,311 - -2.2
1,864,333 - -0.1
1,864,427 - -0.5
1,864,738 + DVU1802 0.30 +0.6
1,864,827 + DVU1802 0.40 +0.0
1,864,927 - DVU1802 0.52 -2.7
1,864,962 + DVU1802 0.56 -0.3
1,864,962 + DVU1802 0.56 -0.1
1,864,970 - DVU1802 0.57 -0.1
1,864,988 + DVU1802 0.59 -2.8
1,865,027 + DVU1802 0.64 -0.3
1,865,027 + DVU1802 0.64 -2.4
1,865,035 - DVU1802 0.65 -3.5
1,865,045 - DVU1802 0.66 +0.3
1,865,072 - DVU1802 0.69 +0.5
1,865,093 + DVU1802 0.71 +0.6
1,865,108 + DVU1802 0.73 +0.9
1,865,108 + DVU1802 0.73 -0.4
1,865,150 - DVU1802 0.78 +0.7
1,865,177 + DVU1802 0.81 -3.3
1,865,219 + DVU1802 0.86 -0.3
1,865,227 - DVU1802 0.87 +0.3
1,865,232 + DVU1802 0.87 -0.2

Or see this region's nucleotide sequence