Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1185

Experiment: MoLS4 with L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1183 and DVU1185 are separated by 170 nucleotidesDVU1185 and mazG are separated by 27 nucleotidesmazG and DVU1187 are separated by 116 nucleotides DVU1183: DVU1183 - HD domain protein (TIGR), at 1,273,387 to 1,274,634 DVU1183 DVU1185: DVU1185 - colicin V production family protein (TIGR), at 1,274,805 to 1,275,284 DVU1185 DVU1186: mazG - phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) (from data), at 1,275,312 to 1,276,115 mazG DVU1187: DVU1187 - hypothetical protein (TIGR), at 1,276,232 to 1,277,056 DVU1187 Position (kb) 1274 1275 1276Strain fitness (log2 ratio) -3 -2 -1 0 1at 1273.845 kb on - strand, within DVU1183at 1273.869 kb on - strand, within DVU1183at 1273.938 kb on + strand, within DVU1183at 1273.956 kb on - strand, within DVU1183at 1273.973 kb on + strand, within DVU1183at 1274.045 kb on - strand, within DVU1183at 1274.065 kb on + strand, within DVU1183at 1274.073 kb on - strand, within DVU1183at 1274.163 kb on - strand, within DVU1183at 1274.165 kb on + strand, within DVU1183at 1274.173 kb on - strand, within DVU1183at 1274.205 kb on + strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.223 kb on - strand, within DVU1183at 1274.256 kb on - strand, within DVU1183at 1274.404 kb on + strand, within DVU1183at 1274.407 kb on + strand, within DVU1183at 1274.413 kb on - strand, within DVU1183at 1274.429 kb on + strand, within DVU1183at 1274.475 kb on - strand, within DVU1183at 1274.490 kb on + strand, within DVU1183at 1274.619 kb on + strandat 1274.627 kb on - strandat 1274.670 kb on - strandat 1274.728 kb on - strandat 1274.741 kb on + strandat 1274.754 kb on - strandat 1274.794 kb on - strandat 1274.886 kb on - strand, within DVU1185at 1275.013 kb on - strand, within DVU1185at 1275.263 kb on - strandat 1275.330 kb on + strandat 1275.370 kb on + strandat 1275.372 kb on + strandat 1275.439 kb on + strand, within mazGat 1275.524 kb on + strand, within mazGat 1275.637 kb on - strand, within mazGat 1275.725 kb on - strand, within mazGat 1275.830 kb on + strand, within mazGat 1275.883 kb on - strand, within mazGat 1275.979 kb on + strand, within mazGat 1276.052 kb on + strandat 1276.118 kb on - strandat 1276.143 kb on - strandat 1276.214 kb on + strandat 1276.254 kb on - strandat 1276.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamine (N)
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1,273,845 - DVU1183 0.37 +0.0
1,273,869 - DVU1183 0.39 +0.8
1,273,938 + DVU1183 0.44 -0.3
1,273,956 - DVU1183 0.46 +0.6
1,273,973 + DVU1183 0.47 -0.1
1,274,045 - DVU1183 0.53 +0.0
1,274,065 + DVU1183 0.54 -2.2
1,274,073 - DVU1183 0.55 -0.5
1,274,163 - DVU1183 0.62 +0.4
1,274,165 + DVU1183 0.62 -0.1
1,274,173 - DVU1183 0.63 -0.3
1,274,205 + DVU1183 0.66 -0.3
1,274,213 - DVU1183 0.66 -1.1
1,274,213 - DVU1183 0.66 -1.3
1,274,213 - DVU1183 0.66 -0.1
1,274,223 - DVU1183 0.67 -0.1
1,274,256 - DVU1183 0.70 -1.0
1,274,404 + DVU1183 0.81 +0.4
1,274,407 + DVU1183 0.82 -0.1
1,274,413 - DVU1183 0.82 -0.1
1,274,429 + DVU1183 0.83 -3.3
1,274,475 - DVU1183 0.87 -0.1
1,274,490 + DVU1183 0.88 -3.0
1,274,619 + -0.3
1,274,627 - -0.5
1,274,670 - +1.4
1,274,728 - -0.3
1,274,741 + -0.2
1,274,754 - +0.6
1,274,794 - -0.6
1,274,886 - DVU1185 0.17 -0.4
1,275,013 - DVU1185 0.43 -3.7
1,275,263 - +0.2
1,275,330 + -1.6
1,275,370 + -2.3
1,275,372 + -2.1
1,275,439 + mazG DVU1186 0.16 -2.3
1,275,524 + mazG DVU1186 0.26 -2.7
1,275,637 - mazG DVU1186 0.40 -1.3
1,275,725 - mazG DVU1186 0.51 -1.3
1,275,830 + mazG DVU1186 0.64 -1.3
1,275,883 - mazG DVU1186 0.71 -0.1
1,275,979 + mazG DVU1186 0.83 -2.4
1,276,052 + -2.7
1,276,118 - -0.7
1,276,143 - -0.4
1,276,214 + +0.0
1,276,254 - +0.2
1,276,276 - -2.4

Or see this region's nucleotide sequence