Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3738

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3737 and Rru_A3738 are separated by 9 nucleotidesRru_A3738 and Rru_A3739 overlap by 4 nucleotides Rru_A3737: Rru_A3737 - KAP P-loop (NCBI), at 4,286,428 to 4,287,762 _A3737 Rru_A3738: Rru_A3738 - Phage integrase (NCBI), at 4,287,772 to 4,288,758 _A3738 Rru_A3739: Rru_A3739 - hypothetical protein (NCBI), at 4,288,755 to 4,290,449 _A3739 Position (kb) 4287 4288 4289Strain fitness (log2 ratio) -2 -1 0 1at 4286.880 kb on + strand, within Rru_A3737at 4286.881 kb on - strand, within Rru_A3737at 4286.902 kb on - strand, within Rru_A3737at 4286.902 kb on - strand, within Rru_A3737at 4286.911 kb on - strand, within Rru_A3737at 4287.135 kb on - strand, within Rru_A3737at 4287.235 kb on + strand, within Rru_A3737at 4287.728 kb on + strandat 4287.748 kb on - strandat 4287.777 kb on + strandat 4289.147 kb on - strand, within Rru_A3739at 4289.243 kb on - strand, within Rru_A3739at 4289.426 kb on - strand, within Rru_A3739at 4289.432 kb on - strand, within Rru_A3739at 4289.594 kb on - strand, within Rru_A3739

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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4,286,880 + Rru_A3737 0.34 -0.2
4,286,881 - Rru_A3737 0.34 -0.0
4,286,902 - Rru_A3737 0.36 -0.0
4,286,902 - Rru_A3737 0.36 -1.2
4,286,911 - Rru_A3737 0.36 -2.7
4,287,135 - Rru_A3737 0.53 -0.0
4,287,235 + Rru_A3737 0.60 -0.0
4,287,728 + -1.0
4,287,748 - -0.0
4,287,777 + -0.0
4,289,147 - Rru_A3739 0.23 -0.0
4,289,243 - Rru_A3739 0.29 -0.0
4,289,426 - Rru_A3739 0.40 -2.6
4,289,432 - Rru_A3739 0.40 -1.6
4,289,594 - Rru_A3739 0.49 -2.0

Or see this region's nucleotide sequence