Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3722

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3721 and Rru_A3722 are separated by 29 nucleotidesRru_A3722 and Rru_A3723 are separated by 142 nucleotides Rru_A3721: Rru_A3721 - sugar transferase (NCBI), at 4,271,848 to 4,272,936 _A3721 Rru_A3722: Rru_A3722 - hypothetical protein (NCBI), at 4,272,966 to 4,273,880 _A3722 Rru_A3723: Rru_A3723 - Glutathionylspermidine amidase (NCBI), at 4,274,023 to 4,275,951 _A3723 Position (kb) 4272 4273 4274Strain fitness (log2 ratio) -2 -1 0 1at 4272.020 kb on - strand, within Rru_A3721at 4272.020 kb on - strand, within Rru_A3721at 4272.223 kb on + strand, within Rru_A3721at 4272.223 kb on + strand, within Rru_A3721at 4272.223 kb on + strand, within Rru_A3721at 4272.223 kb on + strand, within Rru_A3721at 4272.223 kb on + strand, within Rru_A3721at 4272.224 kb on - strand, within Rru_A3721at 4272.224 kb on - strand, within Rru_A3721at 4272.224 kb on - strand, within Rru_A3721at 4272.224 kb on - strand, within Rru_A3721at 4272.224 kb on - strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.246 kb on + strand, within Rru_A3721at 4272.247 kb on - strand, within Rru_A3721at 4272.247 kb on - strand, within Rru_A3721at 4272.247 kb on - strand, within Rru_A3721at 4272.268 kb on + strand, within Rru_A3721at 4272.355 kb on + strand, within Rru_A3721at 4272.356 kb on - strand, within Rru_A3721at 4272.357 kb on + strand, within Rru_A3721at 4272.357 kb on + strand, within Rru_A3721at 4272.358 kb on - strand, within Rru_A3721at 4272.358 kb on - strand, within Rru_A3721at 4272.358 kb on - strand, within Rru_A3721at 4272.722 kb on - strand, within Rru_A3721at 4272.722 kb on - strand, within Rru_A3721at 4272.722 kb on - strand, within Rru_A3721at 4272.831 kb on + strandat 4272.832 kb on - strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.835 kb on + strandat 4272.836 kb on - strandat 4272.836 kb on - strandat 4272.836 kb on - strandat 4272.836 kb on - strandat 4272.836 kb on - strandat 4272.836 kb on - strandat 4272.836 kb on - strandat 4272.836 kb on - strandat 4272.838 kb on + strandat 4272.838 kb on + strandat 4272.839 kb on - strandat 4273.008 kb on + strandat 4273.009 kb on - strandat 4273.009 kb on - strandat 4273.122 kb on + strand, within Rru_A3722at 4273.168 kb on - strand, within Rru_A3722at 4273.257 kb on + strand, within Rru_A3722at 4273.257 kb on + strand, within Rru_A3722at 4273.258 kb on - strand, within Rru_A3722at 4273.258 kb on - strand, within Rru_A3722at 4273.258 kb on - strand, within Rru_A3722at 4273.258 kb on - strand, within Rru_A3722at 4273.383 kb on - strand, within Rru_A3722at 4273.402 kb on - strand, within Rru_A3722at 4273.532 kb on + strand, within Rru_A3722at 4273.533 kb on - strand, within Rru_A3722at 4273.533 kb on - strand, within Rru_A3722at 4273.602 kb on + strand, within Rru_A3722at 4273.602 kb on + strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.603 kb on - strand, within Rru_A3722at 4273.620 kb on + strand, within Rru_A3722at 4273.621 kb on - strand, within Rru_A3722at 4273.621 kb on - strand, within Rru_A3722at 4273.737 kb on - strand, within Rru_A3722at 4273.788 kb on + strand, within Rru_A3722at 4273.789 kb on - strandat 4273.789 kb on - strandat 4273.789 kb on - strandat 4273.789 kb on - strandat 4273.971 kb on - strandat 4273.971 kb on - strandat 4274.039 kb on - strandat 4274.074 kb on + strandat 4274.099 kb on - strandat 4274.111 kb on - strandat 4274.111 kb on - strandat 4274.176 kb on + strandat 4274.176 kb on + strandat 4274.176 kb on + strandat 4274.177 kb on - strandat 4274.187 kb on + strandat 4274.187 kb on + strandat 4274.187 kb on + strandat 4274.188 kb on - strandat 4274.188 kb on - strandat 4274.188 kb on - strandat 4274.188 kb on - strandat 4274.225 kb on - strand, within Rru_A3723at 4274.240 kb on - strand, within Rru_A3723at 4274.240 kb on - strand, within Rru_A3723at 4274.266 kb on + strand, within Rru_A3723at 4274.266 kb on + strand, within Rru_A3723at 4274.266 kb on + strand, within Rru_A3723at 4274.267 kb on - strand, within Rru_A3723at 4274.267 kb on - strand, within Rru_A3723at 4274.504 kb on - strand, within Rru_A3723at 4274.504 kb on - strand, within Rru_A3723at 4274.504 kb on - strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.737 kb on + strand, within Rru_A3723at 4274.738 kb on - strand, within Rru_A3723at 4274.738 kb on - strand, within Rru_A3723at 4274.739 kb on + strand, within Rru_A3723at 4274.739 kb on + strand, within Rru_A3723at 4274.740 kb on - strand, within Rru_A3723at 4274.740 kb on - strand, within Rru_A3723at 4274.794 kb on + strand, within Rru_A3723at 4274.794 kb on + strand, within Rru_A3723at 4274.794 kb on + strand, within Rru_A3723at 4274.795 kb on - strand, within Rru_A3723at 4274.867 kb on - strand, within Rru_A3723

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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4,272,020 - Rru_A3721 0.16 -0.0
4,272,020 - Rru_A3721 0.16 -0.9
4,272,223 + Rru_A3721 0.34 -0.0
4,272,223 + Rru_A3721 0.34 -0.0
4,272,223 + Rru_A3721 0.34 -0.0
4,272,223 + Rru_A3721 0.34 -2.7
4,272,223 + Rru_A3721 0.34 -0.0
4,272,224 - Rru_A3721 0.35 -1.0
4,272,224 - Rru_A3721 0.35 -1.3
4,272,224 - Rru_A3721 0.35 -0.0
4,272,224 - Rru_A3721 0.35 -0.1
4,272,224 - Rru_A3721 0.35 -1.0
4,272,246 + Rru_A3721 0.37 -1.8
4,272,246 + Rru_A3721 0.37 -2.0
4,272,246 + Rru_A3721 0.37 -1.8
4,272,246 + Rru_A3721 0.37 -0.0
4,272,246 + Rru_A3721 0.37 -0.0
4,272,246 + Rru_A3721 0.37 -0.0
4,272,246 + Rru_A3721 0.37 -0.0
4,272,246 + Rru_A3721 0.37 -0.0
4,272,246 + Rru_A3721 0.37 -0.0
4,272,246 + Rru_A3721 0.37 -0.0
4,272,247 - Rru_A3721 0.37 -0.0
4,272,247 - Rru_A3721 0.37 -0.2
4,272,247 - Rru_A3721 0.37 -0.0
4,272,268 + Rru_A3721 0.39 -1.8
4,272,355 + Rru_A3721 0.47 -0.0
4,272,356 - Rru_A3721 0.47 -0.0
4,272,357 + Rru_A3721 0.47 -0.0
4,272,357 + Rru_A3721 0.47 -1.6
4,272,358 - Rru_A3721 0.47 -0.0
4,272,358 - Rru_A3721 0.47 -1.5
4,272,358 - Rru_A3721 0.47 -1.4
4,272,722 - Rru_A3721 0.80 -2.5
4,272,722 - Rru_A3721 0.80 -0.0
4,272,722 - Rru_A3721 0.80 -1.0
4,272,831 + -0.0
4,272,832 - -0.0
4,272,835 + -0.0
4,272,835 + -0.0
4,272,835 + -0.1
4,272,835 + -1.0
4,272,835 + -0.0
4,272,835 + -1.3
4,272,835 + -1.0
4,272,835 + -2.0
4,272,835 + -0.0
4,272,836 - -0.0
4,272,836 - -0.0
4,272,836 - -0.0
4,272,836 - -0.1
4,272,836 - -2.0
4,272,836 - -2.2
4,272,836 - -1.2
4,272,836 - -0.0
4,272,838 + -0.0
4,272,838 + -0.0
4,272,839 - -1.0
4,273,008 + -2.5
4,273,009 - -0.8
4,273,009 - -1.2
4,273,122 + Rru_A3722 0.17 +0.4
4,273,168 - Rru_A3722 0.22 +0.1
4,273,257 + Rru_A3722 0.32 -2.0
4,273,257 + Rru_A3722 0.32 -1.0
4,273,258 - Rru_A3722 0.32 -0.0
4,273,258 - Rru_A3722 0.32 -0.0
4,273,258 - Rru_A3722 0.32 -0.0
4,273,258 - Rru_A3722 0.32 -0.0
4,273,383 - Rru_A3722 0.46 -0.0
4,273,402 - Rru_A3722 0.48 -0.0
4,273,532 + Rru_A3722 0.62 -0.0
4,273,533 - Rru_A3722 0.62 -0.0
4,273,533 - Rru_A3722 0.62 -0.0
4,273,602 + Rru_A3722 0.70 -0.0
4,273,602 + Rru_A3722 0.70 -2.7
4,273,603 - Rru_A3722 0.70 -0.0
4,273,603 - Rru_A3722 0.70 -0.0
4,273,603 - Rru_A3722 0.70 -0.0
4,273,603 - Rru_A3722 0.70 -0.0
4,273,603 - Rru_A3722 0.70 -1.0
4,273,603 - Rru_A3722 0.70 -0.0
4,273,620 + Rru_A3722 0.71 -0.0
4,273,621 - Rru_A3722 0.72 -0.0
4,273,621 - Rru_A3722 0.72 -0.0
4,273,737 - Rru_A3722 0.84 -1.0
4,273,788 + Rru_A3722 0.90 -0.0
4,273,789 - -2.0
4,273,789 - -1.5
4,273,789 - -0.0
4,273,789 - -0.0
4,273,971 - -0.0
4,273,971 - -0.0
4,274,039 - -1.0
4,274,074 + -0.0
4,274,099 - -0.0
4,274,111 - -0.0
4,274,111 - -2.4
4,274,176 + -0.0
4,274,176 + -1.0
4,274,176 + -0.0
4,274,177 - -0.0
4,274,187 + -0.0
4,274,187 + -0.0
4,274,187 + -1.0
4,274,188 - -2.6
4,274,188 - -1.0
4,274,188 - -0.0
4,274,188 - -0.0
4,274,225 - Rru_A3723 0.10 -1.6
4,274,240 - Rru_A3723 0.11 -0.0
4,274,240 - Rru_A3723 0.11 -0.0
4,274,266 + Rru_A3723 0.13 -0.0
4,274,266 + Rru_A3723 0.13 -0.0
4,274,266 + Rru_A3723 0.13 -0.0
4,274,267 - Rru_A3723 0.13 -0.0
4,274,267 - Rru_A3723 0.13 -0.0
4,274,504 - Rru_A3723 0.25 -1.2
4,274,504 - Rru_A3723 0.25 -0.0
4,274,504 - Rru_A3723 0.25 -0.0
4,274,737 + Rru_A3723 0.37 -0.0
4,274,737 + Rru_A3723 0.37 -1.3
4,274,737 + Rru_A3723 0.37 -0.0
4,274,737 + Rru_A3723 0.37 -0.0
4,274,737 + Rru_A3723 0.37 -0.0
4,274,738 - Rru_A3723 0.37 -0.0
4,274,738 - Rru_A3723 0.37 -2.4
4,274,739 + Rru_A3723 0.37 -1.9
4,274,739 + Rru_A3723 0.37 -0.0
4,274,740 - Rru_A3723 0.37 -0.0
4,274,740 - Rru_A3723 0.37 -0.0
4,274,794 + Rru_A3723 0.40 -0.0
4,274,794 + Rru_A3723 0.40 -1.0
4,274,794 + Rru_A3723 0.40 -1.2
4,274,795 - Rru_A3723 0.40 -0.0
4,274,867 - Rru_A3723 0.44 -0.0

Or see this region's nucleotide sequence