Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3665

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3663 and Rru_A3664 are separated by 125 nucleotidesRru_A3664 and Rru_A3665 are separated by 145 nucleotidesRru_A3665 and Rru_A3666 overlap by 10 nucleotides Rru_A3663: Rru_A3663 - NAD-glutamate dehydrogenase (NCBI), at 4,204,911 to 4,209,788 _A3663 Rru_A3664: Rru_A3664 - ABC transporter component (NCBI), at 4,209,914 to 4,210,606 _A3664 Rru_A3665: Rru_A3665 - chemotaxis sensory transducer (NCBI), at 4,210,752 to 4,212,455 _A3665 Rru_A3666: Rru_A3666 - hypothetical protein (NCBI), at 4,212,446 to 4,213,675 _A3666 Position (kb) 4210 4211 4212 4213Strain fitness (log2 ratio) -2 -1 0 1at 4209.826 kb on - strandat 4210.687 kb on + strandat 4210.716 kb on - strandat 4210.780 kb on + strandat 4210.780 kb on + strandat 4210.895 kb on + strandat 4210.895 kb on + strandat 4210.896 kb on - strandat 4211.081 kb on + strand, within Rru_A3665at 4211.452 kb on + strand, within Rru_A3665at 4211.453 kb on - strand, within Rru_A3665at 4211.453 kb on - strand, within Rru_A3665at 4212.492 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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4,209,826 - -0.0
4,210,687 + -0.0
4,210,716 - -0.0
4,210,780 + -0.0
4,210,780 + -0.0
4,210,895 + -1.5
4,210,895 + -0.0
4,210,896 - -0.0
4,211,081 + Rru_A3665 0.19 -0.9
4,211,452 + Rru_A3665 0.41 -0.0
4,211,453 - Rru_A3665 0.41 -2.4
4,211,453 - Rru_A3665 0.41 -2.1
4,212,492 - -0.0

Or see this region's nucleotide sequence