Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3646 and Rru_A3647 are separated by 13 nucleotides Rru_A3647 and Rru_A3648 are separated by 101 nucleotides Rru_A3648 and Rru_A3649 are separated by 76 nucleotides Rru_A3649 and Rru_A3650 are separated by 27 nucleotides
Rru_A3646: Rru_A3646 - Protein tyrosine phosphatase (NCBI), at 4,186,316 to 4,186,807
_A3646
Rru_A3647: Rru_A3647 - hypothetical protein (NCBI), at 4,186,821 to 4,187,435
_A3647
Rru_A3648: Rru_A3648 - Aminoglycoside phosphotransferase (NCBI), at 4,187,537 to 4,188,391
_A3648
Rru_A3649: Rru_A3649 - 2',5' RNA ligase (NCBI), at 4,188,468 to 4,189,067
_A3649
Rru_A3650: Rru_A3650 - Lipolytic enzyme, G-D-S-L (NCBI), at 4,189,095 to 4,189,700
_A3650
Position (kb) 4187
4188
4189 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4186.611 kb on + strand, within Rru_A3646 at 4186.611 kb on + strand, within Rru_A3646 at 4186.611 kb on + strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.612 kb on - strand, within Rru_A3646 at 4186.697 kb on + strand, within Rru_A3646 at 4186.698 kb on - strand, within Rru_A3646 at 4186.698 kb on - strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.700 kb on + strand, within Rru_A3646 at 4186.701 kb on - strand, within Rru_A3646 at 4187.442 kb on - strand at 4187.478 kb on - strand at 4188.176 kb on + strand, within Rru_A3648 at 4188.177 kb on - strand, within Rru_A3648 at 4188.177 kb on - strand, within Rru_A3648 at 4188.177 kb on - strand, within Rru_A3648 at 4188.177 kb on - strand, within Rru_A3648 at 4188.178 kb on + strand, within Rru_A3648 at 4188.179 kb on - strand, within Rru_A3648 at 4188.245 kb on + strand, within Rru_A3648 at 4188.299 kb on + strand, within Rru_A3648 at 4188.440 kb on - strand at 4188.456 kb on - strand at 4188.457 kb on + strand at 4188.457 kb on + strand at 4188.464 kb on + strand at 4188.464 kb on + strand at 4188.465 kb on - strand at 4188.513 kb on + strand at 4188.641 kb on + strand, within Rru_A3649 at 4188.641 kb on + strand, within Rru_A3649 at 4188.641 kb on + strand, within Rru_A3649 at 4188.642 kb on - strand, within Rru_A3649 at 4188.642 kb on - strand, within Rru_A3649 at 4188.642 kb on - strand, within Rru_A3649 at 4188.716 kb on - strand, within Rru_A3649 at 4188.716 kb on - strand, within Rru_A3649 at 4188.716 kb on - strand, within Rru_A3649 at 4189.081 kb on + strand at 4189.082 kb on - strand at 4189.082 kb on - strand at 4189.086 kb on + strand at 4189.086 kb on + strand at 4189.087 kb on - strand at 4189.096 kb on + strand at 4189.096 kb on + strand at 4189.097 kb on - strand at 4189.250 kb on - strand, within Rru_A3650 at 4189.309 kb on + strand, within Rru_A3650 at 4189.309 kb on + strand, within Rru_A3650 at 4189.310 kb on - strand, within Rru_A3650 at 4189.310 kb on - strand, within Rru_A3650
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 4,186,611 + Rru_A3646 0.60 -1.0 4,186,611 + Rru_A3646 0.60 -0.0 4,186,611 + Rru_A3646 0.60 -0.6 4,186,612 - Rru_A3646 0.60 -3.3 4,186,612 - Rru_A3646 0.60 -0.0 4,186,612 - Rru_A3646 0.60 -0.0 4,186,612 - Rru_A3646 0.60 -0.0 4,186,697 + Rru_A3646 0.77 -0.9 4,186,698 - Rru_A3646 0.78 -0.0 4,186,698 - Rru_A3646 0.78 -0.0 4,186,700 + Rru_A3646 0.78 -0.0 4,186,700 + Rru_A3646 0.78 -1.0 4,186,700 + Rru_A3646 0.78 -0.0 4,186,700 + Rru_A3646 0.78 -0.0 4,186,701 - Rru_A3646 0.78 -0.0 4,187,442 - +1.0 4,187,478 - -0.0 4,188,176 + Rru_A3648 0.75 -2.3 4,188,177 - Rru_A3648 0.75 -0.0 4,188,177 - Rru_A3648 0.75 -2.2 4,188,177 - Rru_A3648 0.75 -0.0 4,188,177 - Rru_A3648 0.75 -0.0 4,188,178 + Rru_A3648 0.75 -0.0 4,188,179 - Rru_A3648 0.75 -0.0 4,188,245 + Rru_A3648 0.83 -2.2 4,188,299 + Rru_A3648 0.89 -0.0 4,188,440 - -0.0 4,188,456 - -0.0 4,188,457 + -0.7 4,188,457 + -0.0 4,188,464 + -0.0 4,188,464 + -0.0 4,188,465 - -0.0 4,188,513 + -0.0 4,188,641 + Rru_A3649 0.29 -0.0 4,188,641 + Rru_A3649 0.29 -1.0 4,188,641 + Rru_A3649 0.29 -0.0 4,188,642 - Rru_A3649 0.29 -0.0 4,188,642 - Rru_A3649 0.29 -0.0 4,188,642 - Rru_A3649 0.29 -0.0 4,188,716 - Rru_A3649 0.41 -0.0 4,188,716 - Rru_A3649 0.41 -0.0 4,188,716 - Rru_A3649 0.41 -0.0 4,189,081 + -0.0 4,189,082 - -0.0 4,189,082 - -1.0 4,189,086 + -0.0 4,189,086 + -1.2 4,189,087 - -1.8 4,189,096 + -1.5 4,189,096 + -0.0 4,189,097 - -1.4 4,189,250 - Rru_A3650 0.26 -0.0 4,189,309 + Rru_A3650 0.35 -0.0 4,189,309 + Rru_A3650 0.35 -1.8 4,189,310 - Rru_A3650 0.35 -0.0 4,189,310 - Rru_A3650 0.35 -0.0
Or see this region's nucleotide sequence