Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3499 and Rru_A3500 are separated by 68 nucleotides Rru_A3500 and Rru_A3501 are separated by 39 nucleotides Rru_A3501 and Rru_A3502 are separated by 264 nucleotides Rru_A3502 and Rru_A3503 are separated by 57 nucleotides
Rru_A3499: Rru_A3499 - hypothetical protein (NCBI), at 4,027,700 to 4,028,227
_A3499
Rru_A3500: Rru_A3500 - Cobalamin (vitamin B12) biosynthesis CbiM protein (NCBI), at 4,028,296 to 4,028,931
_A3500
Rru_A3501: Rru_A3501 - lipoprotein, putative (NCBI), at 4,028,971 to 4,029,768
_A3501
Rru_A3502: Rru_A3502 - hypothetical protein (NCBI), at 4,030,033 to 4,030,488
_A3502
Rru_A3503: Rru_A3503 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 4,030,546 to 4,031,010
_A3503
Position (kb) 4028
4029
4030 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4028.050 kb on + strand, within Rru_A3499 at 4028.184 kb on + strand at 4028.236 kb on + strand at 4028.237 kb on - strand at 4028.237 kb on - strand at 4028.925 kb on + strand at 4028.972 kb on + strand at 4028.972 kb on + strand at 4028.973 kb on - strand at 4028.986 kb on - strand at 4028.995 kb on - strand at 4029.102 kb on + strand, within Rru_A3501 at 4029.103 kb on - strand, within Rru_A3501 at 4029.202 kb on + strand, within Rru_A3501 at 4029.203 kb on - strand, within Rru_A3501 at 4029.203 kb on - strand, within Rru_A3501 at 4029.272 kb on + strand, within Rru_A3501 at 4029.272 kb on + strand, within Rru_A3501 at 4029.273 kb on - strand, within Rru_A3501 at 4029.273 kb on - strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.374 kb on + strand, within Rru_A3501 at 4029.375 kb on - strand, within Rru_A3501 at 4029.375 kb on - strand, within Rru_A3501 at 4029.410 kb on + strand, within Rru_A3501 at 4029.736 kb on + strand at 4029.823 kb on + strand at 4029.823 kb on + strand at 4029.823 kb on + strand at 4029.824 kb on - strand at 4029.824 kb on - strand at 4029.825 kb on + strand at 4029.861 kb on + strand at 4029.916 kb on - strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.954 kb on + strand at 4029.955 kb on - strand at 4029.955 kb on - strand at 4029.955 kb on - strand at 4029.955 kb on - strand at 4029.955 kb on - strand at 4030.228 kb on + strand, within Rru_A3502 at 4030.228 kb on + strand, within Rru_A3502 at 4030.705 kb on + strand, within Rru_A3503 at 4030.706 kb on - strand, within Rru_A3503 at 4030.706 kb on - strand, within Rru_A3503 at 4030.715 kb on - strand, within Rru_A3503 at 4030.715 kb on - strand, within Rru_A3503 at 4030.756 kb on + strand, within Rru_A3503 at 4030.757 kb on - strand, within Rru_A3503
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 4,028,050 + Rru_A3499 0.66 -0.0 4,028,184 + -0.0 4,028,236 + -0.0 4,028,237 - -0.0 4,028,237 - -0.0 4,028,925 + -0.0 4,028,972 + -0.0 4,028,972 + -0.0 4,028,973 - -0.0 4,028,986 - -0.0 4,028,995 - -1.5 4,029,102 + Rru_A3501 0.16 -1.3 4,029,103 - Rru_A3501 0.17 -0.0 4,029,202 + Rru_A3501 0.29 -2.3 4,029,203 - Rru_A3501 0.29 -0.0 4,029,203 - Rru_A3501 0.29 -0.0 4,029,272 + Rru_A3501 0.38 -0.0 4,029,272 + Rru_A3501 0.38 -0.0 4,029,273 - Rru_A3501 0.38 -2.5 4,029,273 - Rru_A3501 0.38 -0.0 4,029,374 + Rru_A3501 0.51 -0.0 4,029,374 + Rru_A3501 0.51 -1.6 4,029,374 + Rru_A3501 0.51 -0.0 4,029,374 + Rru_A3501 0.51 -1.0 4,029,374 + Rru_A3501 0.51 -0.0 4,029,374 + Rru_A3501 0.51 -0.0 4,029,375 - Rru_A3501 0.51 -0.0 4,029,375 - Rru_A3501 0.51 -0.0 4,029,410 + Rru_A3501 0.55 -2.2 4,029,736 + -1.6 4,029,823 + -0.1 4,029,823 + -0.1 4,029,823 + -2.7 4,029,824 - +1.9 4,029,824 - -0.1 4,029,825 + -0.1 4,029,861 + -0.1 4,029,916 - -2.8 4,029,954 + -0.1 4,029,954 + -0.1 4,029,954 + -2.1 4,029,954 + -0.2 4,029,954 + -2.1 4,029,954 + -1.0 4,029,955 - -0.1 4,029,955 - -0.1 4,029,955 - -0.1 4,029,955 - -0.1 4,029,955 - -0.1 4,030,228 + Rru_A3502 0.43 -0.5 4,030,228 + Rru_A3502 0.43 -0.1 4,030,705 + Rru_A3503 0.34 -0.1 4,030,706 - Rru_A3503 0.34 -2.2 4,030,706 - Rru_A3503 0.34 -0.1 4,030,715 - Rru_A3503 0.36 -0.1 4,030,715 - Rru_A3503 0.36 -0.1 4,030,756 + Rru_A3503 0.45 -2.2 4,030,757 - Rru_A3503 0.45 -0.1
Or see this region's nucleotide sequence