Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3433

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3432 and Rru_A3433 are separated by 171 nucleotidesRru_A3433 and Rru_A3434 are separated by 169 nucleotides Rru_A3432: Rru_A3432 - hypothetical protein (NCBI), at 3,950,093 to 3,951,616 _A3432 Rru_A3433: Rru_A3433 - Thioredoxin (NCBI), at 3,951,788 to 3,952,102 _A3433 Rru_A3434: Rru_A3434 - UvrD/REP helicase (NCBI), at 3,952,272 to 3,955,835 _A3434 Position (kb) 3951 3952 3953Strain fitness (log2 ratio) -1 0 1at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.168 kb on + strand, within Rru_A3432at 3951.169 kb on - strand, within Rru_A3432at 3951.169 kb on - strand, within Rru_A3432at 3951.169 kb on - strand, within Rru_A3432at 3951.169 kb on - strand, within Rru_A3432at 3951.315 kb on + strand, within Rru_A3432at 3951.340 kb on + strand, within Rru_A3432at 3952.120 kb on - strandat 3952.273 kb on + strandat 3952.273 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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3,951,168 + Rru_A3432 0.71 -1.6
3,951,168 + Rru_A3432 0.71 -0.1
3,951,168 + Rru_A3432 0.71 -1.6
3,951,168 + Rru_A3432 0.71 -0.1
3,951,168 + Rru_A3432 0.71 -0.1
3,951,168 + Rru_A3432 0.71 -0.1
3,951,168 + Rru_A3432 0.71 -0.1
3,951,169 - Rru_A3432 0.71 -0.1
3,951,169 - Rru_A3432 0.71 -0.1
3,951,169 - Rru_A3432 0.71 +0.9
3,951,169 - Rru_A3432 0.71 -0.1
3,951,315 + Rru_A3432 0.80 -0.1
3,951,340 + Rru_A3432 0.82 -0.1
3,952,120 - -0.1
3,952,273 + -0.1
3,952,273 + -0.1

Or see this region's nucleotide sequence