Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3117

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3116 and Rru_A3117 are separated by 36 nucleotidesRru_A3117 and Rru_A3118 are separated by 311 nucleotides Rru_A3116: Rru_A3116 - hypothetical protein (NCBI), at 3,593,349 to 3,594,980 _A3116 Rru_A3117: Rru_A3117 - Polysaccharide export protein (NCBI), at 3,595,017 to 3,595,646 _A3117 Rru_A3118: Rru_A3118 - Lipopolysaccharide biosynthesis (NCBI), at 3,595,958 to 3,597,556 _A3118 Position (kb) 3595 3596Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3594.052 kb on + strand, within Rru_A3116at 3594.052 kb on + strand, within Rru_A3116at 3594.053 kb on - strand, within Rru_A3116at 3594.077 kb on - strand, within Rru_A3116at 3594.134 kb on - strand, within Rru_A3116at 3594.175 kb on + strand, within Rru_A3116at 3594.193 kb on + strand, within Rru_A3116at 3594.194 kb on - strand, within Rru_A3116at 3594.194 kb on - strand, within Rru_A3116at 3594.362 kb on - strand, within Rru_A3116at 3594.382 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.424 kb on + strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.425 kb on - strand, within Rru_A3116at 3594.427 kb on + strand, within Rru_A3116at 3594.428 kb on - strand, within Rru_A3116at 3594.428 kb on - strand, within Rru_A3116at 3594.631 kb on + strand, within Rru_A3116at 3594.632 kb on - strand, within Rru_A3116at 3594.632 kb on - strand, within Rru_A3116at 3594.632 kb on - strand, within Rru_A3116at 3594.652 kb on + strand, within Rru_A3116at 3594.652 kb on + strand, within Rru_A3116at 3594.653 kb on - strand, within Rru_A3116at 3594.653 kb on - strand, within Rru_A3116at 3594.653 kb on - strand, within Rru_A3116at 3594.749 kb on + strand, within Rru_A3116at 3594.749 kb on + strand, within Rru_A3116at 3594.749 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.751 kb on + strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.752 kb on - strand, within Rru_A3116at 3594.766 kb on + strand, within Rru_A3116at 3594.766 kb on + strand, within Rru_A3116at 3594.766 kb on + strand, within Rru_A3116at 3594.766 kb on + strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3594.767 kb on - strand, within Rru_A3116at 3595.018 kb on + strandat 3595.019 kb on - strandat 3595.232 kb on - strand, within Rru_A3117at 3595.232 kb on - strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.336 kb on + strand, within Rru_A3117at 3595.337 kb on - strand, within Rru_A3117at 3595.368 kb on + strand, within Rru_A3117at 3595.368 kb on + strand, within Rru_A3117at 3595.369 kb on - strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.513 kb on + strand, within Rru_A3117at 3595.514 kb on - strand, within Rru_A3117at 3595.514 kb on - strand, within Rru_A3117at 3595.649 kb on + strandat 3595.711 kb on - strandat 3595.711 kb on - strandat 3595.738 kb on + strandat 3595.790 kb on - strandat 3595.791 kb on + strandat 3595.856 kb on + strandat 3595.886 kb on + strandat 3595.886 kb on + strandat 3595.886 kb on + strandat 3595.887 kb on - strandat 3596.087 kb on + strandat 3596.087 kb on + strandat 3596.087 kb on + strandat 3596.087 kb on + strandat 3596.088 kb on - strandat 3596.088 kb on - strandat 3596.088 kb on - strandat 3596.108 kb on + strandat 3596.108 kb on + strandat 3596.109 kb on - strandat 3596.109 kb on - strandat 3596.109 kb on - strandat 3596.109 kb on - strandat 3596.109 kb on - strandat 3596.109 kb on - strandat 3596.300 kb on - strand, within Rru_A3118at 3596.300 kb on - strand, within Rru_A3118at 3596.326 kb on + strand, within Rru_A3118at 3596.327 kb on - strand, within Rru_A3118at 3596.338 kb on + strand, within Rru_A3118at 3596.338 kb on + strand, within Rru_A3118at 3596.574 kb on - strand, within Rru_A3118

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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3,594,052 + Rru_A3116 0.43 +0.0
3,594,052 + Rru_A3116 0.43 +0.0
3,594,053 - Rru_A3116 0.43 +0.0
3,594,077 - Rru_A3116 0.45 +0.0
3,594,134 - Rru_A3116 0.48 +0.0
3,594,175 + Rru_A3116 0.51 +0.0
3,594,193 + Rru_A3116 0.52 -1.6
3,594,194 - Rru_A3116 0.52 +0.0
3,594,194 - Rru_A3116 0.52 +0.0
3,594,362 - Rru_A3116 0.62 +0.0
3,594,382 + Rru_A3116 0.63 -2.0
3,594,424 + Rru_A3116 0.66 -1.0
3,594,424 + Rru_A3116 0.66 +0.0
3,594,424 + Rru_A3116 0.66 -0.9
3,594,424 + Rru_A3116 0.66 +0.0
3,594,424 + Rru_A3116 0.66 +0.0
3,594,424 + Rru_A3116 0.66 -1.1
3,594,424 + Rru_A3116 0.66 +0.0
3,594,425 - Rru_A3116 0.66 -1.2
3,594,425 - Rru_A3116 0.66 +0.0
3,594,425 - Rru_A3116 0.66 +0.0
3,594,425 - Rru_A3116 0.66 +0.0
3,594,425 - Rru_A3116 0.66 -2.2
3,594,425 - Rru_A3116 0.66 +0.0
3,594,425 - Rru_A3116 0.66 +0.0
3,594,427 + Rru_A3116 0.66 +0.0
3,594,428 - Rru_A3116 0.66 +0.0
3,594,428 - Rru_A3116 0.66 +0.0
3,594,631 + Rru_A3116 0.79 -1.0
3,594,632 - Rru_A3116 0.79 +0.0
3,594,632 - Rru_A3116 0.79 +0.0
3,594,632 - Rru_A3116 0.79 +0.0
3,594,652 + Rru_A3116 0.80 -1.6
3,594,652 + Rru_A3116 0.80 +0.0
3,594,653 - Rru_A3116 0.80 -2.7
3,594,653 - Rru_A3116 0.80 +0.0
3,594,653 - Rru_A3116 0.80 +0.0
3,594,749 + Rru_A3116 0.86 +0.0
3,594,749 + Rru_A3116 0.86 -1.0
3,594,749 + Rru_A3116 0.86 -1.8
3,594,751 + Rru_A3116 0.86 -1.0
3,594,751 + Rru_A3116 0.86 +0.0
3,594,751 + Rru_A3116 0.86 -2.6
3,594,751 + Rru_A3116 0.86 -1.7
3,594,751 + Rru_A3116 0.86 -1.0
3,594,751 + Rru_A3116 0.86 +0.0
3,594,751 + Rru_A3116 0.86 +0.0
3,594,752 - Rru_A3116 0.86 +0.0
3,594,752 - Rru_A3116 0.86 -1.0
3,594,752 - Rru_A3116 0.86 -0.1
3,594,752 - Rru_A3116 0.86 +0.0
3,594,752 - Rru_A3116 0.86 +0.0
3,594,752 - Rru_A3116 0.86 -1.0
3,594,752 - Rru_A3116 0.86 -0.6
3,594,752 - Rru_A3116 0.86 +0.0
3,594,752 - Rru_A3116 0.86 +0.0
3,594,752 - Rru_A3116 0.86 +0.0
3,594,766 + Rru_A3116 0.87 +0.0
3,594,766 + Rru_A3116 0.87 +0.0
3,594,766 + Rru_A3116 0.87 +0.0
3,594,766 + Rru_A3116 0.87 +0.0
3,594,767 - Rru_A3116 0.87 -3.8
3,594,767 - Rru_A3116 0.87 +0.0
3,594,767 - Rru_A3116 0.87 +0.0
3,594,767 - Rru_A3116 0.87 -1.9
3,594,767 - Rru_A3116 0.87 -1.4
3,595,018 + +0.0
3,595,019 - -1.0
3,595,232 - Rru_A3117 0.34 -1.3
3,595,232 - Rru_A3117 0.34 -1.4
3,595,336 + Rru_A3117 0.51 +0.0
3,595,336 + Rru_A3117 0.51 -1.9
3,595,336 + Rru_A3117 0.51 +0.0
3,595,336 + Rru_A3117 0.51 +0.0
3,595,336 + Rru_A3117 0.51 +0.0
3,595,337 - Rru_A3117 0.51 +0.0
3,595,368 + Rru_A3117 0.56 -1.4
3,595,368 + Rru_A3117 0.56 -2.1
3,595,369 - Rru_A3117 0.56 +0.0
3,595,513 + Rru_A3117 0.79 -1.2
3,595,513 + Rru_A3117 0.79 +0.0
3,595,513 + Rru_A3117 0.79 -2.7
3,595,513 + Rru_A3117 0.79 +0.0
3,595,513 + Rru_A3117 0.79 -2.7
3,595,513 + Rru_A3117 0.79 -1.0
3,595,513 + Rru_A3117 0.79 -1.7
3,595,514 - Rru_A3117 0.79 +0.0
3,595,514 - Rru_A3117 0.79 +0.1
3,595,649 + -2.7
3,595,711 - +0.0
3,595,711 - +0.0
3,595,738 + -1.0
3,595,790 - +0.0
3,595,791 + -1.9
3,595,856 + -1.0
3,595,886 + -1.7
3,595,886 + +0.0
3,595,886 + -1.6
3,595,887 - +0.0
3,596,087 + +0.0
3,596,087 + +0.0
3,596,087 + +0.0
3,596,087 + -1.0
3,596,088 - +0.0
3,596,088 - +0.0
3,596,088 - +0.0
3,596,108 + -1.8
3,596,108 + -1.1
3,596,109 - -0.9
3,596,109 - +0.0
3,596,109 - +0.0
3,596,109 - +0.0
3,596,109 - -1.0
3,596,109 - +0.0
3,596,300 - Rru_A3118 0.21 +0.0
3,596,300 - Rru_A3118 0.21 +0.0
3,596,326 + Rru_A3118 0.23 -1.7
3,596,327 - Rru_A3118 0.23 -0.1
3,596,338 + Rru_A3118 0.24 +0.0
3,596,338 + Rru_A3118 0.24 +0.0
3,596,574 - Rru_A3118 0.39 +0.0

Or see this region's nucleotide sequence