Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3093

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3092 and Rru_A3093 are separated by 11 nucleotidesRru_A3093 and Rru_A3094 overlap by 4 nucleotides Rru_A3092: Rru_A3092 - Parallel beta-helix repeat (NCBI), at 3,556,912 to 3,558,387 _A3092 Rru_A3093: Rru_A3093 - Membrane protein involved in the export of O-antigen and teichoic acid-like (NCBI), at 3,558,399 to 3,559,922 _A3093 Rru_A3094: Rru_A3094 - O-antigen polymerase (NCBI), at 3,559,919 to 3,561,253 _A3094 Position (kb) 3558 3559 3560Strain fitness (log2 ratio) -3 -2 -1 0 1at 3557.486 kb on + strand, within Rru_A3092at 3557.486 kb on + strand, within Rru_A3092at 3557.487 kb on - strand, within Rru_A3092at 3557.487 kb on - strand, within Rru_A3092at 3557.523 kb on + strand, within Rru_A3092at 3557.523 kb on + strand, within Rru_A3092at 3557.524 kb on - strand, within Rru_A3092at 3557.524 kb on - strand, within Rru_A3092at 3557.582 kb on + strand, within Rru_A3092at 3557.583 kb on - strand, within Rru_A3092at 3557.594 kb on + strand, within Rru_A3092at 3557.625 kb on + strand, within Rru_A3092at 3557.627 kb on + strand, within Rru_A3092at 3557.627 kb on + strand, within Rru_A3092at 3557.627 kb on + strand, within Rru_A3092at 3557.627 kb on + strand, within Rru_A3092at 3557.627 kb on + strand, within Rru_A3092at 3557.627 kb on + strand, within Rru_A3092at 3557.627 kb on + strand, within Rru_A3092at 3557.627 kb on + strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.628 kb on - strand, within Rru_A3092at 3557.666 kb on + strand, within Rru_A3092at 3557.666 kb on + strand, within Rru_A3092at 3557.667 kb on - strand, within Rru_A3092at 3557.744 kb on - strand, within Rru_A3092at 3557.973 kb on - strand, within Rru_A3092at 3557.973 kb on - strand, within Rru_A3092at 3557.973 kb on - strand, within Rru_A3092at 3557.997 kb on + strand, within Rru_A3092at 3558.041 kb on + strand, within Rru_A3092at 3558.041 kb on + strand, within Rru_A3092at 3558.042 kb on - strand, within Rru_A3092at 3558.536 kb on + strandat 3558.616 kb on + strand, within Rru_A3093at 3558.616 kb on + strand, within Rru_A3093at 3558.616 kb on + strand, within Rru_A3093at 3558.616 kb on + strand, within Rru_A3093at 3558.619 kb on + strand, within Rru_A3093at 3558.619 kb on + strand, within Rru_A3093at 3558.619 kb on + strand, within Rru_A3093at 3558.619 kb on + strand, within Rru_A3093at 3558.619 kb on + strand, within Rru_A3093at 3558.619 kb on + strand, within Rru_A3093at 3558.619 kb on + strand, within Rru_A3093at 3558.619 kb on + strand, within Rru_A3093at 3558.620 kb on - strand, within Rru_A3093at 3558.620 kb on - strand, within Rru_A3093at 3558.620 kb on - strand, within Rru_A3093at 3558.620 kb on - strand, within Rru_A3093at 3558.620 kb on - strand, within Rru_A3093at 3558.655 kb on + strand, within Rru_A3093at 3558.655 kb on + strand, within Rru_A3093at 3558.655 kb on + strand, within Rru_A3093at 3558.655 kb on + strand, within Rru_A3093at 3558.655 kb on + strand, within Rru_A3093at 3558.656 kb on - strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.808 kb on + strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.809 kb on - strand, within Rru_A3093at 3558.810 kb on + strand, within Rru_A3093at 3558.819 kb on + strand, within Rru_A3093at 3558.819 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.889 kb on + strand, within Rru_A3093at 3558.890 kb on - strand, within Rru_A3093at 3558.890 kb on - strand, within Rru_A3093at 3558.890 kb on - strand, within Rru_A3093at 3558.890 kb on - strand, within Rru_A3093at 3558.926 kb on + strand, within Rru_A3093at 3558.926 kb on + strand, within Rru_A3093at 3558.927 kb on - strand, within Rru_A3093at 3559.101 kb on - strand, within Rru_A3093at 3559.144 kb on - strand, within Rru_A3093at 3559.172 kb on + strand, within Rru_A3093at 3559.173 kb on - strand, within Rru_A3093at 3559.173 kb on - strand, within Rru_A3093at 3559.193 kb on + strand, within Rru_A3093at 3559.708 kb on + strand, within Rru_A3093at 3559.708 kb on + strand, within Rru_A3093at 3559.709 kb on - strand, within Rru_A3093at 3559.782 kb on + strandat 3559.783 kb on - strandat 3559.783 kb on - strandat 3560.118 kb on + strand, within Rru_A3094at 3560.286 kb on + strand, within Rru_A3094at 3560.286 kb on + strand, within Rru_A3094at 3560.286 kb on + strand, within Rru_A3094at 3560.287 kb on - strand, within Rru_A3094at 3560.287 kb on - strand, within Rru_A3094at 3560.287 kb on - strand, within Rru_A3094at 3560.287 kb on - strand, within Rru_A3094at 3560.703 kb on + strand, within Rru_A3094at 3560.703 kb on + strand, within Rru_A3094at 3560.703 kb on + strand, within Rru_A3094at 3560.835 kb on + strand, within Rru_A3094at 3560.836 kb on - strand, within Rru_A3094

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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3,557,486 + Rru_A3092 0.39 +0.7
3,557,486 + Rru_A3092 0.39 -0.0
3,557,487 - Rru_A3092 0.39 -0.0
3,557,487 - Rru_A3092 0.39 +0.1
3,557,523 + Rru_A3092 0.41 -0.0
3,557,523 + Rru_A3092 0.41 -0.0
3,557,524 - Rru_A3092 0.41 -0.0
3,557,524 - Rru_A3092 0.41 -0.0
3,557,582 + Rru_A3092 0.45 -1.8
3,557,583 - Rru_A3092 0.45 -0.0
3,557,594 + Rru_A3092 0.46 -0.0
3,557,625 + Rru_A3092 0.48 -0.9
3,557,627 + Rru_A3092 0.48 -1.0
3,557,627 + Rru_A3092 0.48 -0.0
3,557,627 + Rru_A3092 0.48 -0.0
3,557,627 + Rru_A3092 0.48 -1.8
3,557,627 + Rru_A3092 0.48 -2.6
3,557,627 + Rru_A3092 0.48 -0.0
3,557,627 + Rru_A3092 0.48 -0.0
3,557,627 + Rru_A3092 0.48 -1.0
3,557,628 - Rru_A3092 0.49 -0.0
3,557,628 - Rru_A3092 0.49 -0.0
3,557,628 - Rru_A3092 0.49 -0.0
3,557,628 - Rru_A3092 0.49 -0.0
3,557,628 - Rru_A3092 0.49 -0.0
3,557,628 - Rru_A3092 0.49 -1.9
3,557,628 - Rru_A3092 0.49 -0.0
3,557,628 - Rru_A3092 0.49 -0.5
3,557,628 - Rru_A3092 0.49 -0.0
3,557,628 - Rru_A3092 0.49 -0.0
3,557,666 + Rru_A3092 0.51 -0.0
3,557,666 + Rru_A3092 0.51 -2.7
3,557,667 - Rru_A3092 0.51 -1.9
3,557,744 - Rru_A3092 0.56 -0.0
3,557,973 - Rru_A3092 0.72 -0.0
3,557,973 - Rru_A3092 0.72 -0.0
3,557,973 - Rru_A3092 0.72 -1.0
3,557,997 + Rru_A3092 0.74 -0.0
3,558,041 + Rru_A3092 0.76 +0.4
3,558,041 + Rru_A3092 0.76 -3.2
3,558,042 - Rru_A3092 0.77 -0.0
3,558,536 + -1.0
3,558,616 + Rru_A3093 0.14 -0.0
3,558,616 + Rru_A3093 0.14 -0.0
3,558,616 + Rru_A3093 0.14 -0.0
3,558,616 + Rru_A3093 0.14 -0.0
3,558,619 + Rru_A3093 0.14 -0.0
3,558,619 + Rru_A3093 0.14 -0.0
3,558,619 + Rru_A3093 0.14 -1.7
3,558,619 + Rru_A3093 0.14 -0.0
3,558,619 + Rru_A3093 0.14 -0.0
3,558,619 + Rru_A3093 0.14 -0.0
3,558,619 + Rru_A3093 0.14 -1.1
3,558,619 + Rru_A3093 0.14 -1.0
3,558,620 - Rru_A3093 0.15 -1.6
3,558,620 - Rru_A3093 0.15 -0.0
3,558,620 - Rru_A3093 0.15 -0.0
3,558,620 - Rru_A3093 0.15 -0.0
3,558,620 - Rru_A3093 0.15 -0.0
3,558,655 + Rru_A3093 0.17 -0.0
3,558,655 + Rru_A3093 0.17 +0.4
3,558,655 + Rru_A3093 0.17 -0.0
3,558,655 + Rru_A3093 0.17 -1.6
3,558,655 + Rru_A3093 0.17 -1.3
3,558,656 - Rru_A3093 0.17 -0.0
3,558,808 + Rru_A3093 0.27 -0.0
3,558,808 + Rru_A3093 0.27 -0.0
3,558,808 + Rru_A3093 0.27 -0.0
3,558,808 + Rru_A3093 0.27 -0.0
3,558,808 + Rru_A3093 0.27 -0.1
3,558,808 + Rru_A3093 0.27 -0.0
3,558,808 + Rru_A3093 0.27 -0.0
3,558,808 + Rru_A3093 0.27 +1.6
3,558,808 + Rru_A3093 0.27 -2.8
3,558,809 - Rru_A3093 0.27 -0.0
3,558,809 - Rru_A3093 0.27 -0.0
3,558,809 - Rru_A3093 0.27 -0.0
3,558,809 - Rru_A3093 0.27 -0.7
3,558,809 - Rru_A3093 0.27 -0.0
3,558,809 - Rru_A3093 0.27 -1.7
3,558,809 - Rru_A3093 0.27 -0.0
3,558,809 - Rru_A3093 0.27 -0.0
3,558,809 - Rru_A3093 0.27 -0.0
3,558,809 - Rru_A3093 0.27 +1.1
3,558,809 - Rru_A3093 0.27 -0.0
3,558,810 + Rru_A3093 0.27 -0.0
3,558,819 + Rru_A3093 0.28 -0.0
3,558,819 + Rru_A3093 0.28 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,889 + Rru_A3093 0.32 -0.0
3,558,890 - Rru_A3093 0.32 -0.0
3,558,890 - Rru_A3093 0.32 -0.0
3,558,890 - Rru_A3093 0.32 -0.0
3,558,890 - Rru_A3093 0.32 -2.2
3,558,926 + Rru_A3093 0.35 -0.9
3,558,926 + Rru_A3093 0.35 -0.0
3,558,927 - Rru_A3093 0.35 -0.0
3,559,101 - Rru_A3093 0.46 -0.0
3,559,144 - Rru_A3093 0.49 -0.0
3,559,172 + Rru_A3093 0.51 -1.5
3,559,173 - Rru_A3093 0.51 +0.5
3,559,173 - Rru_A3093 0.51 -1.3
3,559,193 + Rru_A3093 0.52 -0.0
3,559,708 + Rru_A3093 0.86 -2.7
3,559,708 + Rru_A3093 0.86 -1.4
3,559,709 - Rru_A3093 0.86 -1.7
3,559,782 + -1.8
3,559,783 - -1.0
3,559,783 - +0.1
3,560,118 + Rru_A3094 0.15 -0.0
3,560,286 + Rru_A3094 0.27 -0.0
3,560,286 + Rru_A3094 0.27 -0.0
3,560,286 + Rru_A3094 0.27 -2.7
3,560,287 - Rru_A3094 0.28 -0.0
3,560,287 - Rru_A3094 0.28 -0.0
3,560,287 - Rru_A3094 0.28 -0.0
3,560,287 - Rru_A3094 0.28 -0.0
3,560,703 + Rru_A3094 0.59 -0.0
3,560,703 + Rru_A3094 0.59 -1.0
3,560,703 + Rru_A3094 0.59 -0.0
3,560,835 + Rru_A3094 0.69 -0.8
3,560,836 - Rru_A3094 0.69 -1.0

Or see this region's nucleotide sequence