Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2751

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2750 and Rru_A2751 are separated by 181 nucleotidesRru_A2751 and Rru_A2752 are separated by 57 nucleotides Rru_A2750: Rru_A2750 - Secretion protein HlyD (NCBI), at 3,182,911 to 3,184,110 _A2750 Rru_A2751: Rru_A2751 - hypothetical protein (NCBI), at 3,184,292 to 3,184,819 _A2751 Rru_A2752: Rru_A2752 - Signal Transduction Histidine Kinase (NCBI), at 3,184,877 to 3,186,001 _A2752 Position (kb) 3184 3185Strain fitness (log2 ratio) -2 -1 0 1at 3183.401 kb on + strand, within Rru_A2750at 3183.402 kb on - strand, within Rru_A2750at 3183.402 kb on - strand, within Rru_A2750at 3183.402 kb on - strand, within Rru_A2750at 3183.918 kb on - strand, within Rru_A2750at 3184.357 kb on - strand, within Rru_A2751at 3184.357 kb on - strand, within Rru_A2751at 3184.458 kb on + strand, within Rru_A2751at 3184.458 kb on + strand, within Rru_A2751at 3184.459 kb on - strand, within Rru_A2751at 3184.459 kb on - strand, within Rru_A2751at 3184.459 kb on - strand, within Rru_A2751at 3184.480 kb on - strand, within Rru_A2751at 3184.480 kb on - strand, within Rru_A2751at 3184.480 kb on - strand, within Rru_A2751at 3184.673 kb on - strand, within Rru_A2751at 3184.781 kb on - strandat 3184.813 kb on - strandat 3184.813 kb on - strandat 3185.002 kb on + strand, within Rru_A2752at 3185.003 kb on - strand, within Rru_A2752at 3185.100 kb on + strand, within Rru_A2752at 3185.298 kb on + strand, within Rru_A2752at 3185.299 kb on - strand, within Rru_A2752at 3185.431 kb on + strand, within Rru_A2752at 3185.443 kb on + strand, within Rru_A2752at 3185.443 kb on + strand, within Rru_A2752at 3185.464 kb on + strand, within Rru_A2752at 3185.465 kb on - strand, within Rru_A2752at 3185.670 kb on + strand, within Rru_A2752at 3185.670 kb on + strand, within Rru_A2752at 3185.671 kb on - strand, within Rru_A2752at 3185.806 kb on - strand, within Rru_A2752at 3185.806 kb on - strand, within Rru_A2752

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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3,183,401 + Rru_A2750 0.41 -0.2
3,183,402 - Rru_A2750 0.41 -0.2
3,183,402 - Rru_A2750 0.41 -1.6
3,183,402 - Rru_A2750 0.41 -1.7
3,183,918 - Rru_A2750 0.84 -0.2
3,184,357 - Rru_A2751 0.12 -0.2
3,184,357 - Rru_A2751 0.12 -0.2
3,184,458 + Rru_A2751 0.31 -0.2
3,184,458 + Rru_A2751 0.31 -0.2
3,184,459 - Rru_A2751 0.32 -2.1
3,184,459 - Rru_A2751 0.32 -2.1
3,184,459 - Rru_A2751 0.32 -1.8
3,184,480 - Rru_A2751 0.36 -0.2
3,184,480 - Rru_A2751 0.36 -0.2
3,184,480 - Rru_A2751 0.36 -0.2
3,184,673 - Rru_A2751 0.72 -0.2
3,184,781 - -0.2
3,184,813 - -0.2
3,184,813 - -0.2
3,185,002 + Rru_A2752 0.11 -0.2
3,185,003 - Rru_A2752 0.11 -2.0
3,185,100 + Rru_A2752 0.20 -1.4
3,185,298 + Rru_A2752 0.37 -0.2
3,185,299 - Rru_A2752 0.38 -2.2
3,185,431 + Rru_A2752 0.49 -0.2
3,185,443 + Rru_A2752 0.50 -0.2
3,185,443 + Rru_A2752 0.50 -0.2
3,185,464 + Rru_A2752 0.52 -1.5
3,185,465 - Rru_A2752 0.52 -0.2
3,185,670 + Rru_A2752 0.70 -0.2
3,185,670 + Rru_A2752 0.70 -1.0
3,185,671 - Rru_A2752 0.71 -1.6
3,185,806 - Rru_A2752 0.83 -0.2
3,185,806 - Rru_A2752 0.83 -0.2

Or see this region's nucleotide sequence