Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1109

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1107 and Rru_A1108 are separated by 0 nucleotidesRru_A1108 and Rru_A1109 are separated by 313 nucleotidesRru_A1109 and Rru_A1110 are separated by 367 nucleotides Rru_A1107: Rru_A1107 - hypothetical protein (NCBI), at 1,300,534 to 1,302,567 _A1107 Rru_A1108: Rru_A1108 - hypothetical protein (NCBI), at 1,302,568 to 1,303,155 _A1108 Rru_A1109: Rru_A1109 - chemotaxis sensory transducer (NCBI), at 1,303,469 to 1,305,169 _A1109 Rru_A1110: Rru_A1110 - Sigma 32 (RpoH) (NCBI), at 1,305,537 to 1,306,436 _A1110 Position (kb) 1303 1304 1305 1306Strain fitness (log2 ratio) -2 -1 0 1at 1302.566 kb on - strandat 1302.566 kb on - strandat 1302.654 kb on + strand, within Rru_A1108at 1302.654 kb on + strand, within Rru_A1108at 1302.655 kb on - strand, within Rru_A1108at 1302.720 kb on + strand, within Rru_A1108at 1302.721 kb on - strand, within Rru_A1108at 1302.907 kb on + strand, within Rru_A1108at 1302.907 kb on + strand, within Rru_A1108at 1302.907 kb on + strand, within Rru_A1108at 1302.908 kb on - strand, within Rru_A1108at 1302.908 kb on - strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.937 kb on + strand, within Rru_A1108at 1302.938 kb on - strand, within Rru_A1108at 1302.938 kb on - strand, within Rru_A1108at 1302.939 kb on + strand, within Rru_A1108at 1302.940 kb on - strand, within Rru_A1108at 1302.940 kb on - strand, within Rru_A1108at 1302.940 kb on - strand, within Rru_A1108at 1302.940 kb on - strand, within Rru_A1108at 1303.309 kb on + strandat 1303.439 kb on + strandat 1304.779 kb on + strand, within Rru_A1109at 1304.779 kb on + strand, within Rru_A1109at 1304.779 kb on + strand, within Rru_A1109at 1304.779 kb on + strand, within Rru_A1109at 1304.780 kb on - strand, within Rru_A1109at 1304.780 kb on - strand, within Rru_A1109at 1304.790 kb on + strand, within Rru_A1109at 1304.790 kb on + strand, within Rru_A1109at 1304.791 kb on - strand, within Rru_A1109at 1304.791 kb on - strand, within Rru_A1109at 1304.898 kb on + strand, within Rru_A1109at 1304.914 kb on - strand, within Rru_A1109at 1304.914 kb on - strand, within Rru_A1109at 1304.914 kb on - strand, within Rru_A1109at 1304.966 kb on + strand, within Rru_A1109at 1304.994 kb on + strand, within Rru_A1109at 1304.994 kb on + strand, within Rru_A1109at 1304.995 kb on - strand, within Rru_A1109at 1304.995 kb on - strand, within Rru_A1109at 1304.995 kb on - strand, within Rru_A1109at 1305.109 kb on + strandat 1305.109 kb on + strandat 1305.110 kb on - strandat 1305.146 kb on - strandat 1305.211 kb on + strandat 1305.211 kb on + strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.212 kb on - strandat 1305.252 kb on + strandat 1305.306 kb on - strandat 1305.306 kb on - strandat 1305.332 kb on + strandat 1305.475 kb on - strandat 1305.486 kb on - strandat 1305.539 kb on - strandat 1305.655 kb on + strand, within Rru_A1110at 1305.656 kb on - strand, within Rru_A1110at 1305.865 kb on - strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.090 kb on + strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.091 kb on - strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.121 kb on + strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.122 kb on - strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.126 kb on + strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110at 1306.127 kb on - strand, within Rru_A1110

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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1,302,566 - -0.2
1,302,566 - -0.2
1,302,654 + Rru_A1108 0.15 -0.2
1,302,654 + Rru_A1108 0.15 -2.2
1,302,655 - Rru_A1108 0.15 -0.2
1,302,720 + Rru_A1108 0.26 -0.2
1,302,721 - Rru_A1108 0.26 -0.2
1,302,907 + Rru_A1108 0.58 +0.2
1,302,907 + Rru_A1108 0.58 -0.2
1,302,907 + Rru_A1108 0.58 -0.2
1,302,908 - Rru_A1108 0.58 -0.2
1,302,908 - Rru_A1108 0.58 -0.2
1,302,937 + Rru_A1108 0.63 -0.2
1,302,937 + Rru_A1108 0.63 -1.8
1,302,937 + Rru_A1108 0.63 -1.2
1,302,937 + Rru_A1108 0.63 -0.2
1,302,937 + Rru_A1108 0.63 -0.2
1,302,937 + Rru_A1108 0.63 -0.2
1,302,937 + Rru_A1108 0.63 -0.2
1,302,937 + Rru_A1108 0.63 -0.2
1,302,938 - Rru_A1108 0.63 -1.9
1,302,938 - Rru_A1108 0.63 -2.0
1,302,939 + Rru_A1108 0.63 -0.9
1,302,940 - Rru_A1108 0.63 -0.2
1,302,940 - Rru_A1108 0.63 -0.2
1,302,940 - Rru_A1108 0.63 -1.3
1,302,940 - Rru_A1108 0.63 -0.2
1,303,309 + -0.3
1,303,439 + -0.2
1,304,779 + Rru_A1109 0.77 -0.7
1,304,779 + Rru_A1109 0.77 -2.2
1,304,779 + Rru_A1109 0.77 -2.1
1,304,779 + Rru_A1109 0.77 -0.2
1,304,780 - Rru_A1109 0.77 -0.2
1,304,780 - Rru_A1109 0.77 -2.5
1,304,790 + Rru_A1109 0.78 -0.2
1,304,790 + Rru_A1109 0.78 -2.3
1,304,791 - Rru_A1109 0.78 -2.3
1,304,791 - Rru_A1109 0.78 -2.2
1,304,898 + Rru_A1109 0.84 -0.2
1,304,914 - Rru_A1109 0.85 -0.2
1,304,914 - Rru_A1109 0.85 -0.2
1,304,914 - Rru_A1109 0.85 -0.2
1,304,966 + Rru_A1109 0.88 -0.2
1,304,994 + Rru_A1109 0.90 -0.2
1,304,994 + Rru_A1109 0.90 -1.6
1,304,995 - Rru_A1109 0.90 -2.4
1,304,995 - Rru_A1109 0.90 -0.2
1,304,995 - Rru_A1109 0.90 -2.5
1,305,109 + -0.2
1,305,109 + -0.7
1,305,110 - -0.2
1,305,146 - -1.9
1,305,211 + -0.2
1,305,211 + -0.2
1,305,212 - -0.2
1,305,212 - -0.2
1,305,212 - -0.2
1,305,212 - -1.2
1,305,212 - -0.2
1,305,212 - -0.2
1,305,252 + -0.2
1,305,306 - -0.2
1,305,306 - -0.2
1,305,332 + -0.2
1,305,475 - -0.2
1,305,486 - -0.2
1,305,539 - -0.2
1,305,655 + Rru_A1110 0.13 -0.8
1,305,656 - Rru_A1110 0.13 -0.8
1,305,865 - Rru_A1110 0.36 -1.2
1,306,090 + Rru_A1110 0.61 +0.2
1,306,090 + Rru_A1110 0.61 -1.2
1,306,090 + Rru_A1110 0.61 -1.3
1,306,090 + Rru_A1110 0.61 -0.2
1,306,091 - Rru_A1110 0.62 -0.6
1,306,091 - Rru_A1110 0.62 -0.0
1,306,091 - Rru_A1110 0.62 -0.8
1,306,091 - Rru_A1110 0.62 +0.5
1,306,121 + Rru_A1110 0.65 -0.2
1,306,121 + Rru_A1110 0.65 -0.0
1,306,121 + Rru_A1110 0.65 -0.3
1,306,121 + Rru_A1110 0.65 -0.2
1,306,121 + Rru_A1110 0.65 -1.2
1,306,121 + Rru_A1110 0.65 -1.2
1,306,121 + Rru_A1110 0.65 +0.2
1,306,122 - Rru_A1110 0.65 -0.2
1,306,122 - Rru_A1110 0.65 -0.2
1,306,122 - Rru_A1110 0.65 +0.3
1,306,122 - Rru_A1110 0.65 +0.1
1,306,122 - Rru_A1110 0.65 -0.1
1,306,122 - Rru_A1110 0.65 -0.2
1,306,122 - Rru_A1110 0.65 -0.9
1,306,126 + Rru_A1110 0.65 -0.2
1,306,126 + Rru_A1110 0.65 -0.2
1,306,126 + Rru_A1110 0.65 -0.1
1,306,126 + Rru_A1110 0.65 -0.0
1,306,126 + Rru_A1110 0.65 -0.2
1,306,126 + Rru_A1110 0.65 +0.1
1,306,126 + Rru_A1110 0.65 -0.2
1,306,126 + Rru_A1110 0.65 -0.9
1,306,126 + Rru_A1110 0.65 -1.5
1,306,126 + Rru_A1110 0.65 +0.8
1,306,126 + Rru_A1110 0.65 -0.5
1,306,126 + Rru_A1110 0.65 -0.2
1,306,126 + Rru_A1110 0.65 +0.6
1,306,126 + Rru_A1110 0.65 -0.4
1,306,126 + Rru_A1110 0.65 -1.1
1,306,126 + Rru_A1110 0.65 -0.2
1,306,126 + Rru_A1110 0.65 -0.2
1,306,127 - Rru_A1110 0.66 +0.2
1,306,127 - Rru_A1110 0.66 +0.1
1,306,127 - Rru_A1110 0.66 -0.4
1,306,127 - Rru_A1110 0.66 +0.8
1,306,127 - Rru_A1110 0.66 -0.4
1,306,127 - Rru_A1110 0.66 -0.2
1,306,127 - Rru_A1110 0.66 -0.2
1,306,127 - Rru_A1110 0.66 -0.2
1,306,127 - Rru_A1110 0.66 -0.2
1,306,127 - Rru_A1110 0.66 -0.2
1,306,127 - Rru_A1110 0.66 +0.3

Or see this region's nucleotide sequence