Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0763 and Rru_A0764 overlap by 1 nucleotides Rru_A0764 and Rru_A0765 are separated by 378 nucleotides Rru_A0765 and Rru_A0766 are separated by 987 nucleotides
Rru_A0763: Rru_A0763 - Radical SAM (NCBI), at 896,962 to 898,026
_A0763
Rru_A0764: Rru_A0764 - HesB/YadR/YfhF (NCBI), at 898,026 to 898,340
_A0764
Rru_A0765: Rru_A0765 - hypothetical protein (NCBI), at 898,719 to 902,156
_A0765
Rru_A0766: Rru_A0766 - Adenosine deaminase (NCBI), at 903,144 to 904,148
_A0766
Position (kb) 898
899
900
901
902
903 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 897.760 kb on + strand, within Rru_A0763 at 897.761 kb on - strand, within Rru_A0763 at 897.761 kb on - strand, within Rru_A0763 at 897.794 kb on - strand, within Rru_A0763 at 897.897 kb on + strand, within Rru_A0763 at 897.898 kb on - strand, within Rru_A0763 at 897.898 kb on - strand, within Rru_A0763 at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.052 kb on + strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.053 kb on - strand at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.165 kb on - strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.173 kb on + strand, within Rru_A0764 at 898.338 kb on + strand at 898.339 kb on - strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.374 kb on + strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.375 kb on - strand at 898.453 kb on - strand at 898.453 kb on - strand at 898.513 kb on - strand at 898.654 kb on - strand at 898.654 kb on - strand at 898.654 kb on - strand at 898.695 kb on + strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.696 kb on - strand at 898.736 kb on - strand at 898.877 kb on - strand at 899.147 kb on - strand, within Rru_A0765 at 899.147 kb on - strand, within Rru_A0765 at 899.147 kb on - strand, within Rru_A0765 at 899.152 kb on - strand, within Rru_A0765 at 899.152 kb on - strand, within Rru_A0765 at 899.213 kb on - strand, within Rru_A0765 at 899.213 kb on - strand, within Rru_A0765 at 899.294 kb on + strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765 at 899.305 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.381 kb on - strand, within Rru_A0765 at 899.454 kb on - strand, within Rru_A0765 at 899.490 kb on - strand, within Rru_A0765 at 899.505 kb on - strand, within Rru_A0765 at 899.505 kb on - strand, within Rru_A0765 at 899.505 kb on - strand, within Rru_A0765 at 899.505 kb on - strand, within Rru_A0765 at 899.523 kb on - strand, within Rru_A0765 at 899.523 kb on - strand, within Rru_A0765 at 899.703 kb on - strand, within Rru_A0765 at 899.837 kb on - strand, within Rru_A0765 at 899.907 kb on - strand, within Rru_A0765 at 899.907 kb on - strand, within Rru_A0765 at 899.924 kb on - strand, within Rru_A0765 at 900.103 kb on - strand, within Rru_A0765 at 900.142 kb on - strand, within Rru_A0765 at 900.215 kb on - strand, within Rru_A0765 at 900.412 kb on - strand, within Rru_A0765 at 900.493 kb on - strand, within Rru_A0765 at 900.519 kb on - strand, within Rru_A0765 at 900.519 kb on - strand, within Rru_A0765 at 900.599 kb on - strand, within Rru_A0765 at 900.674 kb on - strand, within Rru_A0765 at 900.716 kb on - strand, within Rru_A0765 at 900.716 kb on - strand, within Rru_A0765 at 900.716 kb on - strand, within Rru_A0765 at 900.734 kb on - strand, within Rru_A0765 at 900.829 kb on - strand, within Rru_A0765 at 900.829 kb on - strand, within Rru_A0765 at 900.877 kb on - strand, within Rru_A0765 at 900.877 kb on - strand, within Rru_A0765 at 900.973 kb on - strand, within Rru_A0765 at 900.973 kb on - strand, within Rru_A0765 at 900.973 kb on - strand, within Rru_A0765 at 901.044 kb on + strand, within Rru_A0765 at 901.045 kb on - strand, within Rru_A0765 at 901.084 kb on + strand, within Rru_A0765 at 901.084 kb on + strand, within Rru_A0765 at 901.085 kb on - strand, within Rru_A0765 at 901.085 kb on - strand, within Rru_A0765 at 901.086 kb on + strand, within Rru_A0765 at 901.086 kb on + strand, within Rru_A0765 at 901.086 kb on + strand, within Rru_A0765 at 901.087 kb on - strand, within Rru_A0765 at 901.137 kb on + strand, within Rru_A0765 at 901.144 kb on - strand, within Rru_A0765 at 901.200 kb on + strand, within Rru_A0765 at 901.251 kb on + strand, within Rru_A0765 at 901.251 kb on + strand, within Rru_A0765 at 901.367 kb on - strand, within Rru_A0765 at 901.385 kb on - strand, within Rru_A0765 at 901.385 kb on - strand, within Rru_A0765 at 901.425 kb on - strand, within Rru_A0765 at 901.507 kb on - strand, within Rru_A0765 at 901.507 kb on - strand, within Rru_A0765 at 901.510 kb on - strand, within Rru_A0765 at 901.565 kb on + strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.566 kb on - strand, within Rru_A0765 at 901.807 kb on - strand, within Rru_A0765 at 901.826 kb on - strand at 901.826 kb on - strand at 901.826 kb on - strand at 901.860 kb on - strand at 901.860 kb on - strand at 901.897 kb on - strand at 901.897 kb on - strand at 901.897 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.934 kb on - strand at 901.936 kb on - strand at 902.009 kb on - strand at 902.011 kb on - strand at 902.103 kb on - strand at 902.103 kb on - strand at 902.104 kb on + strand at 902.131 kb on + strand at 902.131 kb on + strand at 902.132 kb on - strand at 902.132 kb on - strand at 902.189 kb on - strand at 902.201 kb on - strand at 902.241 kb on + strand at 902.241 kb on + strand at 902.241 kb on + strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.264 kb on - strand at 902.298 kb on + strand at 902.298 kb on + strand at 902.299 kb on - strand at 902.300 kb on - strand at 902.306 kb on + strand at 902.306 kb on + strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.356 kb on + strand at 902.357 kb on - strand at 902.365 kb on + strand at 902.365 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.438 kb on - strand at 902.451 kb on + strand at 902.451 kb on + strand at 902.451 kb on + strand at 902.483 kb on - strand at 902.649 kb on + strand at 902.649 kb on + strand at 902.650 kb on - strand at 902.662 kb on - strand at 902.695 kb on + strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.700 kb on + strand at 902.751 kb on - strand at 902.920 kb on + strand at 902.984 kb on - strand at 903.023 kb on + strand at 903.025 kb on + strand at 903.026 kb on - strand at 903.026 kb on - strand at 903.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 897,760 + Rru_A0763 0.75 -0.1 897,761 - Rru_A0763 0.75 -1.1 897,761 - Rru_A0763 0.75 -0.1 897,794 - Rru_A0763 0.78 -2.3 897,897 + Rru_A0763 0.88 -0.1 897,898 - Rru_A0763 0.88 -0.1 897,898 - Rru_A0763 0.88 -0.1 898,052 + -0.1 898,052 + -0.1 898,052 + -0.1 898,052 + -0.1 898,052 + -0.1 898,053 - -2.7 898,053 - -0.1 898,053 - -1.9 898,053 - -0.1 898,053 - -0.1 898,053 - -0.1 898,165 - Rru_A0764 0.44 -0.1 898,165 - Rru_A0764 0.44 -1.7 898,165 - Rru_A0764 0.44 -0.1 898,165 - Rru_A0764 0.44 -3.4 898,173 + Rru_A0764 0.47 -0.1 898,173 + Rru_A0764 0.47 -0.1 898,173 + Rru_A0764 0.47 -3.9 898,338 + -0.1 898,339 - -0.1 898,374 + -3.1 898,374 + -1.7 898,374 + -0.1 898,374 + -1.5 898,374 + -0.1 898,374 + -0.1 898,375 - -2.4 898,375 - -0.1 898,375 - -0.1 898,375 - -0.1 898,375 - -1.8 898,453 - -2.9 898,453 - -0.1 898,513 - -0.1 898,654 - -0.1 898,654 - -1.1 898,654 - -0.1 898,695 + -0.1 898,696 - -0.1 898,696 - -0.1 898,696 - -1.7 898,696 - -0.1 898,696 - -0.0 898,696 - -2.0 898,736 - -0.1 898,877 - -0.1 899,147 - Rru_A0765 0.12 -0.1 899,147 - Rru_A0765 0.12 -1.1 899,147 - Rru_A0765 0.12 -0.1 899,152 - Rru_A0765 0.13 -1.1 899,152 - Rru_A0765 0.13 -0.1 899,213 - Rru_A0765 0.14 -0.1 899,213 - Rru_A0765 0.14 -0.1 899,294 + Rru_A0765 0.17 -0.1 899,305 - Rru_A0765 0.17 -0.1 899,305 - Rru_A0765 0.17 -0.1 899,305 - Rru_A0765 0.17 -1.0 899,381 - Rru_A0765 0.19 -0.1 899,381 - Rru_A0765 0.19 -0.1 899,381 - Rru_A0765 0.19 -0.1 899,381 - Rru_A0765 0.19 -0.1 899,381 - Rru_A0765 0.19 -0.1 899,454 - Rru_A0765 0.21 -0.1 899,490 - Rru_A0765 0.22 -0.6 899,505 - Rru_A0765 0.23 -1.1 899,505 - Rru_A0765 0.23 -0.3 899,505 - Rru_A0765 0.23 -0.1 899,505 - Rru_A0765 0.23 -1.8 899,523 - Rru_A0765 0.23 -1.2 899,523 - Rru_A0765 0.23 -0.5 899,703 - Rru_A0765 0.29 -0.1 899,837 - Rru_A0765 0.33 -0.1 899,907 - Rru_A0765 0.35 -0.1 899,907 - Rru_A0765 0.35 -1.3 899,924 - Rru_A0765 0.35 -0.1 900,103 - Rru_A0765 0.40 -2.2 900,142 - Rru_A0765 0.41 -0.1 900,215 - Rru_A0765 0.44 -3.0 900,412 - Rru_A0765 0.49 -0.1 900,493 - Rru_A0765 0.52 -1.1 900,519 - Rru_A0765 0.52 -0.1 900,519 - Rru_A0765 0.52 -0.1 900,599 - Rru_A0765 0.55 -0.1 900,674 - Rru_A0765 0.57 -1.9 900,716 - Rru_A0765 0.58 -2.2 900,716 - Rru_A0765 0.58 -0.1 900,716 - Rru_A0765 0.58 -2.6 900,734 - Rru_A0765 0.59 -3.1 900,829 - Rru_A0765 0.61 -0.1 900,829 - Rru_A0765 0.61 -1.0 900,877 - Rru_A0765 0.63 -2.6 900,877 - Rru_A0765 0.63 -0.1 900,973 - Rru_A0765 0.66 -0.1 900,973 - Rru_A0765 0.66 -0.1 900,973 - Rru_A0765 0.66 -0.1 901,044 + Rru_A0765 0.68 -0.1 901,045 - Rru_A0765 0.68 -0.1 901,084 + Rru_A0765 0.69 -0.1 901,084 + Rru_A0765 0.69 -2.6 901,085 - Rru_A0765 0.69 -1.3 901,085 - Rru_A0765 0.69 -0.1 901,086 + Rru_A0765 0.69 -0.1 901,086 + Rru_A0765 0.69 -3.2 901,086 + Rru_A0765 0.69 -0.1 901,087 - Rru_A0765 0.69 -2.0 901,137 + Rru_A0765 0.70 -0.8 901,144 - Rru_A0765 0.71 -0.1 901,200 + Rru_A0765 0.72 -0.1 901,251 + Rru_A0765 0.74 -0.1 901,251 + Rru_A0765 0.74 -0.1 901,367 - Rru_A0765 0.77 -0.1 901,385 - Rru_A0765 0.78 -0.1 901,385 - Rru_A0765 0.78 -1.2 901,425 - Rru_A0765 0.79 -0.1 901,507 - Rru_A0765 0.81 -0.1 901,507 - Rru_A0765 0.81 -1.7 901,510 - Rru_A0765 0.81 -1.1 901,565 + Rru_A0765 0.83 -0.1 901,566 - Rru_A0765 0.83 -0.1 901,566 - Rru_A0765 0.83 -0.1 901,566 - Rru_A0765 0.83 -2.1 901,566 - Rru_A0765 0.83 -0.1 901,566 - Rru_A0765 0.83 -0.1 901,807 - Rru_A0765 0.90 -0.1 901,826 - -1.8 901,826 - -0.1 901,826 - +0.4 901,860 - -0.1 901,860 - -0.1 901,897 - -0.1 901,897 - +0.9 901,897 - -1.1 901,934 - -1.7 901,934 - -0.1 901,934 - -1.2 901,934 - -0.1 901,934 - -0.1 901,934 - -0.1 901,936 - -0.1 902,009 - -0.1 902,011 - -1.8 902,103 - -0.1 902,103 - -0.1 902,104 + -0.1 902,131 + -0.1 902,131 + -0.1 902,132 - -1.1 902,132 - -0.1 902,189 - -0.1 902,201 - -2.4 902,241 + -0.1 902,241 + -0.1 902,241 + -0.1 902,242 - -0.1 902,242 - -0.1 902,242 - -0.1 902,242 - -3.6 902,264 - +0.1 902,298 + -0.1 902,298 + -0.1 902,299 - -0.1 902,300 - -0.1 902,306 + -0.1 902,306 + -0.1 902,307 - -0.1 902,307 - -3.8 902,307 - -1.1 902,307 - -0.1 902,356 + -0.1 902,357 - -1.0 902,365 + -0.1 902,365 + -2.2 902,428 + -0.1 902,428 + -1.6 902,428 + -0.1 902,428 + -2.1 902,438 - -3.8 902,451 + +1.0 902,451 + -3.9 902,451 + -1.5 902,483 - -2.4 902,649 + -0.1 902,649 + -0.1 902,650 - -2.7 902,662 - -0.1 902,695 + -0.1 902,696 - -1.7 902,696 - -0.1 902,696 - -0.1 902,696 - -0.1 902,696 - -0.1 902,696 - -0.1 902,700 + -0.1 902,751 - -1.3 902,920 + -1.4 902,984 - -2.3 903,023 + -2.1 903,025 + -0.1 903,026 - -0.1 903,026 - +0.6 903,030 + -0.1
Or see this region's nucleotide sequence