Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0671 and Rru_A0672 are separated by 84 nucleotides Rru_A0672 and Rru_AR0017 are separated by 217 nucleotides Rru_AR0017 and Rru_A0673 are separated by 44 nucleotides Rru_A0673 and Rru_A0674 are separated by 57 nucleotides
Rru_A0671: Rru_A0671 - cobalamin synthesis CobW protein (NCBI), at 793,740 to 794,792
_A0671
Rru_A0672: Rru_A0672 - hypothetical protein (NCBI), at 794,877 to 795,188
_A0672
Rru_AR0017: Rru_AR0017 - tRNA-Ser (NCBI), at 795,406 to 795,496
_AR0017
Rru_A0673: Rru_A0673 - hypothetical protein (NCBI), at 795,541 to 795,846
_A0673
Rru_A0674: Rru_A0674 - Phage integrase (NCBI), at 795,904 to 797,064
_A0674
Position (kb) 794
795
796 Strain fitness (log2 ratio) -2
-1
0
1 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.048 kb on + strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.049 kb on - strand, within Rru_A0671 at 794.484 kb on - strand, within Rru_A0671 at 794.682 kb on + strand, within Rru_A0671 at 794.682 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.685 kb on + strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.686 kb on - strand, within Rru_A0671 at 794.791 kb on - strand at 794.862 kb on - strand at 795.021 kb on - strand, within Rru_A0672 at 795.094 kb on + strand, within Rru_A0672 at 795.095 kb on - strand, within Rru_A0672 at 795.169 kb on - strand at 795.169 kb on - strand at 795.174 kb on - strand at 795.184 kb on - strand at 795.256 kb on + strand at 795.256 kb on + strand at 795.257 kb on - strand at 795.519 kb on + strand at 795.522 kb on + strand at 795.598 kb on + strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.599 kb on - strand, within Rru_A0673 at 795.629 kb on - strand, within Rru_A0673 at 795.629 kb on - strand, within Rru_A0673 at 795.793 kb on - strand, within Rru_A0673 at 795.837 kb on + strand at 795.837 kb on + strand at 795.838 kb on - strand at 795.840 kb on + strand at 795.840 kb on + strand at 795.841 kb on - strand at 795.841 kb on - strand at 795.928 kb on - strand at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.104 kb on + strand, within Rru_A0674 at 796.105 kb on - strand, within Rru_A0674 at 796.105 kb on - strand, within Rru_A0674 at 796.134 kb on - strand, within Rru_A0674
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 794,048 + Rru_A0671 0.29 -0.1 794,048 + Rru_A0671 0.29 -0.1 794,048 + Rru_A0671 0.29 -0.1 794,048 + Rru_A0671 0.29 -0.1 794,049 - Rru_A0671 0.29 -2.4 794,049 - Rru_A0671 0.29 -0.1 794,049 - Rru_A0671 0.29 -0.1 794,049 - Rru_A0671 0.29 -0.1 794,049 - Rru_A0671 0.29 -0.1 794,484 - Rru_A0671 0.71 -0.1 794,682 + Rru_A0671 0.89 -0.1 794,682 + Rru_A0671 0.89 -0.1 794,685 + Rru_A0671 0.90 -0.1 794,685 + Rru_A0671 0.90 -0.1 794,685 + Rru_A0671 0.90 -0.1 794,686 - Rru_A0671 0.90 -0.1 794,686 - Rru_A0671 0.90 -0.1 794,686 - Rru_A0671 0.90 -0.1 794,791 - -2.6 794,862 - -0.1 795,021 - Rru_A0672 0.46 -0.1 795,094 + Rru_A0672 0.70 -1.7 795,095 - Rru_A0672 0.70 -0.1 795,169 - -2.3 795,169 - -0.1 795,174 - -1.1 795,184 - -0.1 795,256 + -1.1 795,256 + -0.1 795,257 - -0.1 795,519 + -0.1 795,522 + -1.1 795,598 + Rru_A0673 0.19 -1.1 795,599 - Rru_A0673 0.19 -0.1 795,599 - Rru_A0673 0.19 -1.5 795,599 - Rru_A0673 0.19 -0.1 795,629 - Rru_A0673 0.29 -2.5 795,629 - Rru_A0673 0.29 -2.1 795,793 - Rru_A0673 0.82 -0.1 795,837 + -0.1 795,837 + -0.1 795,838 - -0.1 795,840 + -1.1 795,840 + -0.1 795,841 - -0.1 795,841 - -0.1 795,928 - -0.1 796,104 + Rru_A0674 0.17 -0.1 796,104 + Rru_A0674 0.17 -0.1 796,104 + Rru_A0674 0.17 -0.1 796,104 + Rru_A0674 0.17 -0.1 796,105 - Rru_A0674 0.17 -0.1 796,105 - Rru_A0674 0.17 -0.9 796,134 - Rru_A0674 0.20 -2.1
Or see this region's nucleotide sequence