Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0654 and Rru_A0655 are separated by 135 nucleotides Rru_A0655 and Rru_A0656 are separated by 33 nucleotides Rru_A0656 and Rru_A0657 are separated by 10 nucleotides Rru_A0657 and Rru_A0658 are separated by 101 nucleotides
Rru_A0654: Rru_A0654 - Multiple antibiotic resistance (MarC)-related proteins (NCBI), at 774,349 to 775,002
_A0654
Rru_A0655: Rru_A0655 - Transcriptional Regulator, AsnC family (NCBI), at 775,138 to 775,728
_A0655
Rru_A0656: Rru_A0656 - delta-1-pyrroline-5-carboxylate dehydrogenase 3 (NCBI), at 775,762 to 779,472
_A0656
Rru_A0657: Rru_A0657 - Lysine exporter protein (LYSE/YGGA) (NCBI), at 779,483 to 780,094
_A0657
Rru_A0658: Rru_A0658 - Transcriptional Regulator, LysR family (NCBI), at 780,196 to 781,128
_A0658
Position (kb) 775
776
777
778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 774.845 kb on + strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 774.846 kb on - strand, within Rru_A0654 at 775.048 kb on + strand at 775.048 kb on + strand at 775.190 kb on + strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.191 kb on - strand at 775.195 kb on - strand at 775.286 kb on + strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.287 kb on - strand, within Rru_A0655 at 775.637 kb on + strand, within Rru_A0655 at 775.639 kb on + strand, within Rru_A0655 at 776.011 kb on + strand at 776.011 kb on + strand at 776.012 kb on - strand at 776.178 kb on + strand, within Rru_A0656 at 776.178 kb on + strand, within Rru_A0656 at 776.339 kb on - strand, within Rru_A0656 at 776.339 kb on - strand, within Rru_A0656 at 776.340 kb on + strand, within Rru_A0656 at 776.340 kb on + strand, within Rru_A0656 at 776.340 kb on + strand, within Rru_A0656 at 776.340 kb on + strand, within Rru_A0656 at 776.341 kb on - strand, within Rru_A0656 at 776.341 kb on - strand, within Rru_A0656 at 776.341 kb on - strand, within Rru_A0656 at 776.341 kb on - strand, within Rru_A0656 at 776.344 kb on + strand, within Rru_A0656 at 776.344 kb on + strand, within Rru_A0656 at 776.344 kb on + strand, within Rru_A0656 at 776.345 kb on - strand, within Rru_A0656 at 776.410 kb on + strand, within Rru_A0656 at 776.411 kb on - strand, within Rru_A0656 at 776.700 kb on + strand, within Rru_A0656 at 776.717 kb on - strand, within Rru_A0656 at 776.809 kb on + strand, within Rru_A0656 at 776.809 kb on + strand, within Rru_A0656 at 776.809 kb on + strand, within Rru_A0656 at 776.826 kb on + strand, within Rru_A0656 at 776.826 kb on + strand, within Rru_A0656 at 776.827 kb on - strand, within Rru_A0656 at 776.827 kb on - strand, within Rru_A0656 at 776.896 kb on + strand, within Rru_A0656 at 776.896 kb on + strand, within Rru_A0656 at 776.896 kb on + strand, within Rru_A0656 at 776.896 kb on + strand, within Rru_A0656 at 776.897 kb on - strand, within Rru_A0656 at 776.897 kb on - strand, within Rru_A0656 at 776.897 kb on - strand, within Rru_A0656 at 776.897 kb on - strand, within Rru_A0656 at 776.897 kb on - strand, within Rru_A0656 at 776.897 kb on - strand, within Rru_A0656 at 776.897 kb on - strand, within Rru_A0656 at 776.898 kb on + strand, within Rru_A0656 at 776.899 kb on - strand, within Rru_A0656 at 776.937 kb on + strand, within Rru_A0656 at 776.937 kb on + strand, within Rru_A0656 at 776.937 kb on + strand, within Rru_A0656 at 776.937 kb on + strand, within Rru_A0656 at 776.937 kb on + strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.938 kb on - strand, within Rru_A0656 at 776.941 kb on + strand, within Rru_A0656 at 776.942 kb on - strand, within Rru_A0656 at 777.094 kb on + strand, within Rru_A0656 at 777.094 kb on + strand, within Rru_A0656 at 777.094 kb on + strand, within Rru_A0656 at 777.094 kb on + strand, within Rru_A0656 at 777.095 kb on - strand, within Rru_A0656 at 777.095 kb on - strand, within Rru_A0656 at 777.095 kb on - strand, within Rru_A0656 at 777.130 kb on + strand, within Rru_A0656 at 777.131 kb on - strand, within Rru_A0656 at 777.165 kb on + strand, within Rru_A0656 at 777.334 kb on - strand, within Rru_A0656 at 777.334 kb on - strand, within Rru_A0656 at 777.607 kb on + strand, within Rru_A0656 at 777.607 kb on + strand, within Rru_A0656 at 777.713 kb on - strand, within Rru_A0656 at 777.715 kb on + strand, within Rru_A0656 at 777.715 kb on + strand, within Rru_A0656 at 777.715 kb on + strand, within Rru_A0656 at 777.757 kb on - strand, within Rru_A0656 at 777.757 kb on - strand, within Rru_A0656 at 778.647 kb on + strand, within Rru_A0656 at 778.647 kb on + strand, within Rru_A0656 at 778.647 kb on + strand, within Rru_A0656 at 778.647 kb on + strand, within Rru_A0656 at 778.647 kb on + strand, within Rru_A0656 at 778.647 kb on + strand, within Rru_A0656 at 778.648 kb on - strand, within Rru_A0656 at 778.648 kb on - strand, within Rru_A0656 at 778.648 kb on - strand, within Rru_A0656 at 778.648 kb on - strand, within Rru_A0656 at 778.648 kb on - strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.651 kb on + strand, within Rru_A0656 at 778.652 kb on - strand, within Rru_A0656 at 778.652 kb on - strand, within Rru_A0656 at 778.652 kb on - strand, within Rru_A0656 at 778.652 kb on - strand, within Rru_A0656 at 778.652 kb on - strand, within Rru_A0656 at 778.973 kb on + strand, within Rru_A0656 at 778.974 kb on - strand, within Rru_A0656 at 778.974 kb on - strand, within Rru_A0656 at 779.392 kb on + strand at 779.392 kb on + strand at 779.713 kb on - strand, within Rru_A0657 at 779.713 kb on - strand, within Rru_A0657 at 779.713 kb on - strand, within Rru_A0657 at 780.122 kb on - strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.135 kb on + strand at 780.136 kb on - strand at 780.136 kb on - strand at 780.158 kb on + strand at 780.158 kb on + strand at 780.158 kb on + strand at 780.162 kb on + strand at 780.182 kb on + strand at 780.191 kb on + strand at 780.360 kb on + strand, within Rru_A0658 at 780.361 kb on - strand, within Rru_A0658 at 780.396 kb on + strand, within Rru_A0658 at 780.397 kb on - strand, within Rru_A0658
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 774,845 + Rru_A0654 0.76 -0.1 774,846 - Rru_A0654 0.76 -1.1 774,846 - Rru_A0654 0.76 -2.1 774,846 - Rru_A0654 0.76 -1.6 775,048 + -2.5 775,048 + -0.1 775,190 + -0.1 775,191 - -1.5 775,191 - -0.1 775,191 - -0.1 775,191 - -0.1 775,191 - -0.1 775,195 - -0.1 775,286 + Rru_A0655 0.25 -1.6 775,287 - Rru_A0655 0.25 -0.1 775,287 - Rru_A0655 0.25 -0.1 775,287 - Rru_A0655 0.25 -0.1 775,637 + Rru_A0655 0.84 -0.5 775,639 + Rru_A0655 0.85 -3.1 776,011 + -1.1 776,011 + -0.1 776,012 - -0.1 776,178 + Rru_A0656 0.11 -0.1 776,178 + Rru_A0656 0.11 -1.1 776,339 - Rru_A0656 0.16 -0.1 776,339 - Rru_A0656 0.16 -0.1 776,340 + Rru_A0656 0.16 -0.1 776,340 + Rru_A0656 0.16 -0.8 776,340 + Rru_A0656 0.16 -0.1 776,340 + Rru_A0656 0.16 -0.1 776,341 - Rru_A0656 0.16 -0.1 776,341 - Rru_A0656 0.16 -0.1 776,341 - Rru_A0656 0.16 -0.1 776,341 - Rru_A0656 0.16 -0.1 776,344 + Rru_A0656 0.16 -2.0 776,344 + Rru_A0656 0.16 -0.1 776,344 + Rru_A0656 0.16 -0.1 776,345 - Rru_A0656 0.16 -0.1 776,410 + Rru_A0656 0.17 -0.1 776,411 - Rru_A0656 0.17 -1.1 776,700 + Rru_A0656 0.25 -1.6 776,717 - Rru_A0656 0.26 -1.7 776,809 + Rru_A0656 0.28 -0.1 776,809 + Rru_A0656 0.28 -0.1 776,809 + Rru_A0656 0.28 -0.1 776,826 + Rru_A0656 0.29 -0.1 776,826 + Rru_A0656 0.29 -0.1 776,827 - Rru_A0656 0.29 -0.1 776,827 - Rru_A0656 0.29 -0.1 776,896 + Rru_A0656 0.31 -0.1 776,896 + Rru_A0656 0.31 -0.1 776,896 + Rru_A0656 0.31 -0.1 776,896 + Rru_A0656 0.31 -0.1 776,897 - Rru_A0656 0.31 -0.1 776,897 - Rru_A0656 0.31 -0.1 776,897 - Rru_A0656 0.31 -1.3 776,897 - Rru_A0656 0.31 -2.7 776,897 - Rru_A0656 0.31 -0.1 776,897 - Rru_A0656 0.31 -2.6 776,897 - Rru_A0656 0.31 -0.1 776,898 + Rru_A0656 0.31 -0.1 776,899 - Rru_A0656 0.31 -0.1 776,937 + Rru_A0656 0.32 -0.1 776,937 + Rru_A0656 0.32 -3.6 776,937 + Rru_A0656 0.32 -0.1 776,937 + Rru_A0656 0.32 -0.1 776,937 + Rru_A0656 0.32 -0.1 776,938 - Rru_A0656 0.32 -0.1 776,938 - Rru_A0656 0.32 -0.1 776,938 - Rru_A0656 0.32 -1.1 776,938 - Rru_A0656 0.32 -0.1 776,938 - Rru_A0656 0.32 -0.1 776,938 - Rru_A0656 0.32 -0.1 776,938 - Rru_A0656 0.32 -0.1 776,938 - Rru_A0656 0.32 -0.1 776,938 - Rru_A0656 0.32 -2.4 776,938 - Rru_A0656 0.32 -0.4 776,941 + Rru_A0656 0.32 -2.0 776,942 - Rru_A0656 0.32 -0.1 777,094 + Rru_A0656 0.36 -1.1 777,094 + Rru_A0656 0.36 -0.1 777,094 + Rru_A0656 0.36 -0.1 777,094 + Rru_A0656 0.36 -0.1 777,095 - Rru_A0656 0.36 -1.1 777,095 - Rru_A0656 0.36 -1.7 777,095 - Rru_A0656 0.36 -1.5 777,130 + Rru_A0656 0.37 -0.1 777,131 - Rru_A0656 0.37 -0.1 777,165 + Rru_A0656 0.38 -0.1 777,334 - Rru_A0656 0.42 -0.1 777,334 - Rru_A0656 0.42 -1.0 777,607 + Rru_A0656 0.50 -1.4 777,607 + Rru_A0656 0.50 -0.1 777,713 - Rru_A0656 0.53 -1.0 777,715 + Rru_A0656 0.53 -0.1 777,715 + Rru_A0656 0.53 -2.3 777,715 + Rru_A0656 0.53 -0.1 777,757 - Rru_A0656 0.54 -0.1 777,757 - Rru_A0656 0.54 -0.1 778,647 + Rru_A0656 0.78 -0.1 778,647 + Rru_A0656 0.78 -1.1 778,647 + Rru_A0656 0.78 -0.1 778,647 + Rru_A0656 0.78 -0.1 778,647 + Rru_A0656 0.78 -0.1 778,647 + Rru_A0656 0.78 -0.1 778,648 - Rru_A0656 0.78 -0.1 778,648 - Rru_A0656 0.78 -1.3 778,648 - Rru_A0656 0.78 -0.1 778,648 - Rru_A0656 0.78 -0.1 778,648 - Rru_A0656 0.78 -0.1 778,651 + Rru_A0656 0.78 -1.1 778,651 + Rru_A0656 0.78 -0.1 778,651 + Rru_A0656 0.78 -0.1 778,651 + Rru_A0656 0.78 -0.1 778,651 + Rru_A0656 0.78 -0.1 778,651 + Rru_A0656 0.78 -2.3 778,651 + Rru_A0656 0.78 -0.1 778,651 + Rru_A0656 0.78 -2.6 778,651 + Rru_A0656 0.78 -0.1 778,652 - Rru_A0656 0.78 -0.1 778,652 - Rru_A0656 0.78 -0.1 778,652 - Rru_A0656 0.78 +0.5 778,652 - Rru_A0656 0.78 -1.1 778,652 - Rru_A0656 0.78 -0.1 778,973 + Rru_A0656 0.87 -0.1 778,974 - Rru_A0656 0.87 +0.9 778,974 - Rru_A0656 0.87 -0.1 779,392 + -0.1 779,392 + -1.1 779,713 - Rru_A0657 0.38 -0.7 779,713 - Rru_A0657 0.38 -1.8 779,713 - Rru_A0657 0.38 -0.1 780,122 - -0.1 780,135 + -0.1 780,135 + -0.1 780,135 + -3.2 780,135 + -1.5 780,135 + -1.1 780,135 + -1.1 780,136 - -0.1 780,136 - -0.1 780,158 + -3.0 780,158 + -0.1 780,158 + -0.1 780,162 + -0.1 780,182 + -0.1 780,191 + -0.1 780,360 + Rru_A0658 0.18 -0.1 780,361 - Rru_A0658 0.18 -0.1 780,396 + Rru_A0658 0.21 -0.1 780,397 - Rru_A0658 0.22 -0.1
Or see this region's nucleotide sequence