Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0631

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0629 and Rru_A0630 are separated by 22 nucleotidesRru_A0630 and Rru_A0631 are separated by 38 nucleotidesRru_A0631 and Rru_A0632 are separated by 435 nucleotides Rru_A0629: Rru_A0629 - Geranylgeranyl reductase (NCBI), at 747,847 to 749,088 _A0629 Rru_A0630: Rru_A0630 - hypothetical protein (NCBI), at 749,111 to 749,464 _A0630 Rru_A0631: Rru_A0631 - Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI), at 749,503 to 750,855 _A0631 Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501 _A0632 Position (kb) 749 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1at 748.516 kb on + strand, within Rru_A0629at 748.517 kb on - strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.547 kb on + strand, within Rru_A0629at 748.548 kb on - strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.762 kb on + strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.763 kb on - strand, within Rru_A0629at 748.766 kb on - strand, within Rru_A0629at 748.993 kb on + strandat 748.994 kb on - strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.032 kb on + strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.033 kb on - strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.552 kb on + strandat 749.553 kb on - strandat 749.610 kb on - strandat 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.849 kb on + strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 749.850 kb on - strand, within Rru_A0631at 750.152 kb on + strand, within Rru_A0631at 750.153 kb on - strand, within Rru_A0631at 750.244 kb on + strand, within Rru_A0631at 750.244 kb on + strand, within Rru_A0631at 750.244 kb on + strand, within Rru_A0631at 750.245 kb on - strand, within Rru_A0631at 750.245 kb on - strand, within Rru_A0631at 750.245 kb on - strand, within Rru_A0631at 750.245 kb on - strand, within Rru_A0631at 750.251 kb on + strand, within Rru_A0631at 750.252 kb on - strand, within Rru_A0631at 750.252 kb on - strand, within Rru_A0631at 750.252 kb on - strand, within Rru_A0631at 750.331 kb on - strand, within Rru_A0631at 750.861 kb on - strandat 750.862 kb on + strandat 750.862 kb on + strandat 750.863 kb on - strandat 750.868 kb on - strandat 750.902 kb on + strandat 750.902 kb on + strandat 750.904 kb on + strandat 750.904 kb on + strandat 750.904 kb on + strandat 750.904 kb on + strandat 750.905 kb on - strandat 750.905 kb on - strandat 750.905 kb on - strandat 751.011 kb on + strandat 751.012 kb on - strandat 751.061 kb on + strandat 751.061 kb on + strandat 751.062 kb on - strandat 751.062 kb on - strandat 751.105 kb on + strandat 751.105 kb on + strandat 751.105 kb on + strandat 751.106 kb on - strandat 751.106 kb on - strandat 751.106 kb on - strandat 751.222 kb on + strandat 751.239 kb on - strandat 751.241 kb on + strandat 751.241 kb on + strandat 751.242 kb on - strandat 751.264 kb on + strandat 751.264 kb on + strandat 751.264 kb on + strandat 751.265 kb on - strandat 751.265 kb on - strandat 751.265 kb on - strandat 751.337 kb on - strandat 751.419 kb on - strandat 751.625 kb on - strand, within Rru_A0632at 751.656 kb on + strand, within Rru_A0632at 751.656 kb on + strand, within Rru_A0632at 751.799 kb on - strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.846 kb on + strand, within Rru_A0632at 751.847 kb on - strand, within Rru_A0632at 751.847 kb on - strand, within Rru_A0632at 751.847 kb on - strand, within Rru_A0632at 751.847 kb on - strand, within Rru_A0632

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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748,516 + Rru_A0629 0.54 -0.2
748,517 - Rru_A0629 0.54 -3.1
748,547 + Rru_A0629 0.56 -0.2
748,547 + Rru_A0629 0.56 -1.3
748,547 + Rru_A0629 0.56 -1.2
748,548 - Rru_A0629 0.56 -0.5
748,762 + Rru_A0629 0.74 -3.7
748,762 + Rru_A0629 0.74 -0.2
748,762 + Rru_A0629 0.74 -0.2
748,762 + Rru_A0629 0.74 -0.2
748,762 + Rru_A0629 0.74 -0.2
748,762 + Rru_A0629 0.74 -0.2
748,762 + Rru_A0629 0.74 -0.2
748,762 + Rru_A0629 0.74 -1.9
748,763 - Rru_A0629 0.74 -0.2
748,763 - Rru_A0629 0.74 -0.2
748,763 - Rru_A0629 0.74 -0.2
748,763 - Rru_A0629 0.74 -0.2
748,763 - Rru_A0629 0.74 -0.2
748,766 - Rru_A0629 0.74 -0.2
748,993 + -0.2
748,994 - -0.2
749,032 + -0.2
749,032 + -0.2
749,032 + -1.2
749,032 + -0.2
749,032 + -0.2
749,033 - -0.2
749,033 - -0.2
749,033 - -0.2
749,033 - -1.7
749,033 - -2.5
749,033 - -0.2
749,033 - -2.7
749,552 + -0.1
749,552 + -0.1
749,552 + -2.5
749,552 + -0.1
749,553 - -0.1
749,610 - -0.1
749,849 + Rru_A0631 0.26 -0.2
749,849 + Rru_A0631 0.26 -0.1
749,849 + Rru_A0631 0.26 -0.1
749,849 + Rru_A0631 0.26 -2.1
749,849 + Rru_A0631 0.26 -1.7
749,849 + Rru_A0631 0.26 -0.1
749,850 - Rru_A0631 0.26 -0.1
749,850 - Rru_A0631 0.26 -0.1
749,850 - Rru_A0631 0.26 -0.3
749,850 - Rru_A0631 0.26 -0.1
750,152 + Rru_A0631 0.48 -0.1
750,153 - Rru_A0631 0.48 -0.1
750,244 + Rru_A0631 0.55 -1.1
750,244 + Rru_A0631 0.55 -0.1
750,244 + Rru_A0631 0.55 +0.7
750,245 - Rru_A0631 0.55 -0.0
750,245 - Rru_A0631 0.55 -0.6
750,245 - Rru_A0631 0.55 -0.3
750,245 - Rru_A0631 0.55 -0.1
750,251 + Rru_A0631 0.55 -0.1
750,252 - Rru_A0631 0.55 -0.1
750,252 - Rru_A0631 0.55 -2.3
750,252 - Rru_A0631 0.55 -0.1
750,331 - Rru_A0631 0.61 -0.1
750,861 - -0.1
750,862 + -0.1
750,862 + -0.1
750,863 - -1.0
750,868 - -0.1
750,902 + -0.1
750,902 + -0.1
750,904 + +0.3
750,904 + -0.1
750,904 + -0.1
750,904 + -2.5
750,905 - -1.1
750,905 - -0.1
750,905 - -0.1
751,011 + -0.1
751,012 - -0.1
751,061 + -1.2
751,061 + -0.1
751,062 - -0.4
751,062 - -1.9
751,105 + -0.1
751,105 + -0.3
751,105 + -0.1
751,106 - -2.0
751,106 - -0.1
751,106 - -1.8
751,222 + -2.8
751,239 - -1.1
751,241 + -2.1
751,241 + -1.2
751,242 - -0.1
751,264 + -2.4
751,264 + -1.3
751,264 + -2.5
751,265 - -0.1
751,265 - -0.1
751,265 - -0.1
751,337 - -0.1
751,419 - -1.4
751,625 - Rru_A0632 0.15 -0.4
751,656 + Rru_A0632 0.17 -0.1
751,656 + Rru_A0632 0.17 -2.4
751,799 - Rru_A0632 0.23 -0.1
751,846 + Rru_A0632 0.25 -1.4
751,846 + Rru_A0632 0.25 -0.1
751,846 + Rru_A0632 0.25 -0.1
751,846 + Rru_A0632 0.25 -0.1
751,846 + Rru_A0632 0.25 -0.1
751,847 - Rru_A0632 0.25 -1.7
751,847 - Rru_A0632 0.25 -0.1
751,847 - Rru_A0632 0.25 -0.1
751,847 - Rru_A0632 0.25 -0.1

Or see this region's nucleotide sequence