Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0603 and Rru_A0604 are separated by 13 nucleotides Rru_A0604 and Rru_A0605 are separated by 111 nucleotides Rru_A0605 and Rru_A0606 overlap by 1 nucleotides Rru_A0606 and Rru_A0607 are separated by 38 nucleotides
Rru_A0603: Rru_A0603 - Two component Transcriptional regulator, Winged helix family (NCBI), at 716,384 to 717,085
_A0603
Rru_A0604: Rru_A0604 - hypothetical protein (NCBI), at 717,099 to 717,278
_A0604
Rru_A0605: Rru_A0605 - hypothetical protein (NCBI), at 717,390 to 718,445
_A0605
Rru_A0606: Rru_A0606 - Transcriptional Regulator, LysR family (NCBI), at 718,445 to 719,353
_A0606
Rru_A0607: Rru_A0607 - Adenine phosphoribosyl transferase (NCBI), at 719,392 to 719,907
_A0607
Position (kb) 717
718
719 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 716.442 kb on - strand at 716.443 kb on + strand at 716.687 kb on + strand, within Rru_A0603 at 716.688 kb on - strand, within Rru_A0603 at 716.690 kb on - strand, within Rru_A0603 at 716.690 kb on - strand, within Rru_A0603 at 716.783 kb on + strand, within Rru_A0603 at 716.784 kb on - strand, within Rru_A0603 at 716.837 kb on + strand, within Rru_A0603 at 716.838 kb on - strand, within Rru_A0603 at 716.838 kb on - strand, within Rru_A0603 at 716.838 kb on - strand, within Rru_A0603 at 716.948 kb on + strand, within Rru_A0603 at 717.083 kb on + strand at 717.083 kb on + strand at 717.083 kb on + strand at 717.084 kb on - strand at 717.084 kb on - strand at 717.283 kb on - strand at 717.296 kb on + strand at 717.317 kb on - strand at 717.585 kb on - strand, within Rru_A0605 at 717.860 kb on + strand, within Rru_A0605 at 717.894 kb on + strand, within Rru_A0605 at 717.894 kb on + strand, within Rru_A0605 at 717.895 kb on - strand, within Rru_A0605 at 717.895 kb on - strand, within Rru_A0605 at 717.984 kb on + strand, within Rru_A0605 at 717.985 kb on - strand, within Rru_A0605 at 718.233 kb on - strand, within Rru_A0605 at 718.474 kb on + strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.475 kb on - strand at 718.821 kb on - strand, within Rru_A0606
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 716,442 - -0.2 716,443 + -0.2 716,687 + Rru_A0603 0.43 -1.5 716,688 - Rru_A0603 0.43 -0.2 716,690 - Rru_A0603 0.44 -0.2 716,690 - Rru_A0603 0.44 -2.9 716,783 + Rru_A0603 0.57 -0.2 716,784 - Rru_A0603 0.57 -0.2 716,837 + Rru_A0603 0.65 -0.2 716,838 - Rru_A0603 0.65 -0.2 716,838 - Rru_A0603 0.65 -0.2 716,838 - Rru_A0603 0.65 -0.2 716,948 + Rru_A0603 0.80 -0.2 717,083 + -0.2 717,083 + -0.2 717,083 + -1.2 717,084 - -0.2 717,084 - -1.4 717,283 - -0.2 717,296 + -0.2 717,317 - -0.2 717,585 - Rru_A0605 0.18 -0.2 717,860 + Rru_A0605 0.45 -0.2 717,894 + Rru_A0605 0.48 -0.2 717,894 + Rru_A0605 0.48 -0.2 717,895 - Rru_A0605 0.48 -0.2 717,895 - Rru_A0605 0.48 -2.7 717,984 + Rru_A0605 0.56 -0.2 717,985 - Rru_A0605 0.56 -2.7 718,233 - Rru_A0605 0.80 -0.2 718,474 + -0.2 718,475 - -0.2 718,475 - -2.0 718,475 - -0.2 718,475 - -0.2 718,821 - Rru_A0606 0.41 -0.2
Or see this region's nucleotide sequence