Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0567 and Rru_A0568 are separated by 94 nucleotides Rru_A0568 and Rru_A0569 are separated by 260 nucleotides Rru_A0569 and Rru_A0570 are separated by 59 nucleotides
Rru_A0567: Rru_A0567 - Peptidase U62, modulator of DNA gyrase (NCBI), at 672,593 to 674,035
_A0567
Rru_A0568: Rru_A0568 - chemotaxis sensory transducer (NCBI), at 674,130 to 676,118
_A0568
Rru_A0569: Rru_A0569 - Chorismate mutase (NCBI), at 676,379 to 676,723
_A0569
Rru_A0570: Rru_A0570 - Glutamate--cysteine ligase (NCBI), at 676,783 to 678,153
_A0570
Position (kb) 674
675
676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 673.574 kb on + strand, within Rru_A0567 at 673.574 kb on + strand, within Rru_A0567 at 673.575 kb on - strand, within Rru_A0567 at 673.643 kb on + strand, within Rru_A0567 at 673.643 kb on + strand, within Rru_A0567 at 673.644 kb on - strand, within Rru_A0567 at 673.644 kb on - strand, within Rru_A0567 at 673.675 kb on + strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.676 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.740 kb on - strand, within Rru_A0567 at 673.811 kb on + strand, within Rru_A0567 at 673.811 kb on + strand, within Rru_A0567 at 674.075 kb on + strand at 674.075 kb on + strand at 674.075 kb on + strand at 674.076 kb on - strand at 674.253 kb on - strand at 674.622 kb on - strand, within Rru_A0568 at 675.055 kb on + strand, within Rru_A0568 at 675.056 kb on - strand, within Rru_A0568 at 675.204 kb on - strand, within Rru_A0568 at 675.439 kb on + strand, within Rru_A0568 at 675.439 kb on + strand, within Rru_A0568 at 675.440 kb on - strand, within Rru_A0568 at 675.556 kb on + strand, within Rru_A0568 at 676.030 kb on + strand at 676.031 kb on - strand at 676.031 kb on - strand at 676.031 kb on - strand at 676.168 kb on - strand at 676.298 kb on + strand at 676.298 kb on + strand at 676.368 kb on + strand at 676.564 kb on + strand, within Rru_A0569 at 676.565 kb on - strand, within Rru_A0569 at 676.566 kb on + strand, within Rru_A0569 at 676.566 kb on + strand, within Rru_A0569 at 676.567 kb on - strand, within Rru_A0569 at 676.588 kb on - strand, within Rru_A0569 at 676.588 kb on - strand, within Rru_A0569 at 676.588 kb on - strand, within Rru_A0569 at 676.695 kb on + strand at 676.784 kb on + strand at 676.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 673,574 + Rru_A0567 0.68 -0.2 673,574 + Rru_A0567 0.68 -0.2 673,575 - Rru_A0567 0.68 -0.2 673,643 + Rru_A0567 0.73 -0.2 673,643 + Rru_A0567 0.73 -1.0 673,644 - Rru_A0567 0.73 -0.2 673,644 - Rru_A0567 0.73 -0.2 673,675 + Rru_A0567 0.75 -0.2 673,676 - Rru_A0567 0.75 -0.4 673,676 - Rru_A0567 0.75 -0.2 673,676 - Rru_A0567 0.75 -1.4 673,676 - Rru_A0567 0.75 -0.2 673,676 - Rru_A0567 0.75 -0.2 673,740 - Rru_A0567 0.79 -0.2 673,740 - Rru_A0567 0.79 -0.2 673,740 - Rru_A0567 0.79 -1.6 673,740 - Rru_A0567 0.79 -0.2 673,811 + Rru_A0567 0.84 -0.8 673,811 + Rru_A0567 0.84 -0.2 674,075 + -1.2 674,075 + -0.2 674,075 + -0.2 674,076 - -0.2 674,253 - -0.2 674,622 - Rru_A0568 0.25 -0.7 675,055 + Rru_A0568 0.47 -1.4 675,056 - Rru_A0568 0.47 -2.1 675,204 - Rru_A0568 0.54 -0.2 675,439 + Rru_A0568 0.66 -0.2 675,439 + Rru_A0568 0.66 -1.2 675,440 - Rru_A0568 0.66 -0.2 675,556 + Rru_A0568 0.72 -3.1 676,030 + -0.1 676,031 - -1.5 676,031 - -0.1 676,031 - -0.1 676,168 - -0.1 676,298 + -1.1 676,298 + -0.1 676,368 + -0.1 676,564 + Rru_A0569 0.54 -1.1 676,565 - Rru_A0569 0.54 -0.1 676,566 + Rru_A0569 0.54 -0.1 676,566 + Rru_A0569 0.54 -0.1 676,567 - Rru_A0569 0.54 -1.1 676,588 - Rru_A0569 0.61 -3.1 676,588 - Rru_A0569 0.61 -0.1 676,588 - Rru_A0569 0.61 -0.1 676,695 + -0.1 676,784 + -0.1 676,787 + -0.1
Or see this region's nucleotide sequence