Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0564 and Rru_A0565 are separated by 67 nucleotides Rru_A0565 and Rru_A0566 are separated by 185 nucleotides Rru_A0566 and Rru_A0567 are separated by 278 nucleotides
Rru_A0564: Rru_A0564 - hypothetical protein (NCBI), at 667,041 to 668,165
_A0564
Rru_A0565: Rru_A0565 - hypothetical protein (NCBI), at 668,233 to 668,568
_A0565
Rru_A0566: Rru_A0566 - hypothetical protein (NCBI), at 668,754 to 672,314
_A0566
Rru_A0567: Rru_A0567 - Peptidase U62, modulator of DNA gyrase (NCBI), at 672,593 to 674,035
_A0567
Position (kb) 668
669
670
671
672
673 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 667.869 kb on + strand, within Rru_A0564 at 667.940 kb on + strand, within Rru_A0564 at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.235 kb on - strand at 668.235 kb on - strand at 668.256 kb on + strand at 668.257 kb on - strand at 668.703 kb on - strand at 668.703 kb on - strand at 669.349 kb on + strand, within Rru_A0566 at 669.349 kb on + strand, within Rru_A0566 at 669.350 kb on - strand, within Rru_A0566 at 669.361 kb on + strand, within Rru_A0566 at 669.361 kb on + strand, within Rru_A0566 at 669.361 kb on + strand, within Rru_A0566 at 669.676 kb on + strand, within Rru_A0566 at 669.677 kb on - strand, within Rru_A0566 at 669.908 kb on - strand, within Rru_A0566 at 669.908 kb on - strand, within Rru_A0566 at 669.908 kb on - strand, within Rru_A0566 at 669.908 kb on - strand, within Rru_A0566 at 669.908 kb on - strand, within Rru_A0566 at 670.042 kb on + strand, within Rru_A0566 at 670.189 kb on + strand, within Rru_A0566 at 670.235 kb on + strand, within Rru_A0566 at 670.235 kb on + strand, within Rru_A0566 at 670.235 kb on + strand, within Rru_A0566 at 670.235 kb on + strand, within Rru_A0566 at 670.236 kb on - strand, within Rru_A0566 at 670.236 kb on - strand, within Rru_A0566 at 670.313 kb on - strand, within Rru_A0566 at 670.315 kb on + strand, within Rru_A0566 at 670.315 kb on + strand, within Rru_A0566 at 670.316 kb on - strand, within Rru_A0566 at 670.538 kb on - strand, within Rru_A0566 at 670.540 kb on + strand, within Rru_A0566 at 670.540 kb on + strand, within Rru_A0566 at 670.541 kb on - strand, within Rru_A0566 at 670.541 kb on - strand, within Rru_A0566 at 670.541 kb on - strand, within Rru_A0566 at 670.541 kb on - strand, within Rru_A0566 at 670.557 kb on - strand, within Rru_A0566 at 670.900 kb on + strand, within Rru_A0566 at 671.094 kb on + strand, within Rru_A0566 at 671.203 kb on + strand, within Rru_A0566 at 671.204 kb on - strand, within Rru_A0566 at 671.204 kb on - strand, within Rru_A0566 at 671.204 kb on - strand, within Rru_A0566 at 671.204 kb on - strand, within Rru_A0566 at 671.204 kb on - strand, within Rru_A0566 at 671.204 kb on - strand, within Rru_A0566 at 671.204 kb on - strand, within Rru_A0566 at 671.296 kb on + strand, within Rru_A0566 at 671.296 kb on + strand, within Rru_A0566 at 671.296 kb on + strand, within Rru_A0566 at 671.297 kb on - strand, within Rru_A0566 at 671.358 kb on - strand, within Rru_A0566 at 671.542 kb on + strand, within Rru_A0566 at 671.542 kb on + strand, within Rru_A0566 at 671.542 kb on + strand, within Rru_A0566 at 671.543 kb on - strand, within Rru_A0566 at 671.543 kb on - strand, within Rru_A0566 at 671.543 kb on - strand, within Rru_A0566 at 671.543 kb on - strand, within Rru_A0566 at 671.552 kb on - strand, within Rru_A0566 at 671.552 kb on - strand, within Rru_A0566 at 671.552 kb on - strand, within Rru_A0566 at 671.552 kb on - strand, within Rru_A0566 at 671.643 kb on + strand, within Rru_A0566 at 671.644 kb on - strand, within Rru_A0566 at 671.695 kb on + strand, within Rru_A0566 at 671.696 kb on - strand, within Rru_A0566 at 671.825 kb on + strand, within Rru_A0566 at 671.951 kb on + strand, within Rru_A0566 at 672.232 kb on + strand at 672.232 kb on + strand at 672.233 kb on - strand at 672.331 kb on + strand at 672.332 kb on - strand at 672.332 kb on - strand at 672.400 kb on + strand at 672.531 kb on + strand at 672.531 kb on + strand at 672.531 kb on + strand at 672.532 kb on - strand at 672.532 kb on - strand at 672.716 kb on + strand at 672.776 kb on - strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.947 kb on + strand, within Rru_A0567 at 672.948 kb on - strand, within Rru_A0567
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 667,869 + Rru_A0564 0.74 -0.2 667,940 + Rru_A0564 0.80 -0.2 668,234 + -2.9 668,234 + -2.6 668,234 + -0.2 668,234 + -0.2 668,234 + -0.2 668,235 - -0.2 668,235 - -0.2 668,256 + -0.2 668,257 - -0.2 668,703 - -4.0 668,703 - -0.2 669,349 + Rru_A0566 0.17 -0.2 669,349 + Rru_A0566 0.17 -0.7 669,350 - Rru_A0566 0.17 -0.2 669,361 + Rru_A0566 0.17 -0.2 669,361 + Rru_A0566 0.17 -2.0 669,361 + Rru_A0566 0.17 -2.0 669,676 + Rru_A0566 0.26 -0.2 669,677 - Rru_A0566 0.26 -0.2 669,908 - Rru_A0566 0.32 -0.2 669,908 - Rru_A0566 0.32 -0.2 669,908 - Rru_A0566 0.32 -0.2 669,908 - Rru_A0566 0.32 -0.2 669,908 - Rru_A0566 0.32 -2.8 670,042 + Rru_A0566 0.36 -0.2 670,189 + Rru_A0566 0.40 -0.2 670,235 + Rru_A0566 0.42 -1.9 670,235 + Rru_A0566 0.42 -2.1 670,235 + Rru_A0566 0.42 -0.2 670,235 + Rru_A0566 0.42 -0.2 670,236 - Rru_A0566 0.42 -0.3 670,236 - Rru_A0566 0.42 -0.2 670,313 - Rru_A0566 0.44 -0.2 670,315 + Rru_A0566 0.44 -3.0 670,315 + Rru_A0566 0.44 -0.2 670,316 - Rru_A0566 0.44 -0.2 670,538 - Rru_A0566 0.50 -0.2 670,540 + Rru_A0566 0.50 -0.2 670,540 + Rru_A0566 0.50 -0.2 670,541 - Rru_A0566 0.50 -1.2 670,541 - Rru_A0566 0.50 -0.2 670,541 - Rru_A0566 0.50 -0.2 670,541 - Rru_A0566 0.50 -1.2 670,557 - Rru_A0566 0.51 -0.2 670,900 + Rru_A0566 0.60 -1.9 671,094 + Rru_A0566 0.66 -0.2 671,203 + Rru_A0566 0.69 -0.2 671,204 - Rru_A0566 0.69 -0.2 671,204 - Rru_A0566 0.69 -1.8 671,204 - Rru_A0566 0.69 -0.2 671,204 - Rru_A0566 0.69 -0.2 671,204 - Rru_A0566 0.69 -0.2 671,204 - Rru_A0566 0.69 +0.9 671,204 - Rru_A0566 0.69 -1.2 671,296 + Rru_A0566 0.71 -0.2 671,296 + Rru_A0566 0.71 -0.2 671,296 + Rru_A0566 0.71 -3.1 671,297 - Rru_A0566 0.71 -0.2 671,358 - Rru_A0566 0.73 -2.4 671,542 + Rru_A0566 0.78 -0.2 671,542 + Rru_A0566 0.78 -2.0 671,542 + Rru_A0566 0.78 -1.8 671,543 - Rru_A0566 0.78 -0.2 671,543 - Rru_A0566 0.78 -1.2 671,543 - Rru_A0566 0.78 -1.0 671,543 - Rru_A0566 0.78 -2.7 671,552 - Rru_A0566 0.79 -2.5 671,552 - Rru_A0566 0.79 +0.1 671,552 - Rru_A0566 0.79 -0.2 671,552 - Rru_A0566 0.79 -0.5 671,643 + Rru_A0566 0.81 -2.3 671,644 - Rru_A0566 0.81 -1.1 671,695 + Rru_A0566 0.83 -0.2 671,696 - Rru_A0566 0.83 -0.6 671,825 + Rru_A0566 0.86 -0.2 671,951 + Rru_A0566 0.90 -1.2 672,232 + -1.4 672,232 + -0.2 672,233 - -1.8 672,331 + -0.2 672,332 - -0.2 672,332 - -1.7 672,400 + -1.7 672,531 + -0.2 672,531 + -1.2 672,531 + -0.2 672,532 - -0.2 672,532 - -0.2 672,716 + -0.2 672,776 - Rru_A0567 0.13 -1.2 672,947 + Rru_A0567 0.25 -0.2 672,947 + Rru_A0567 0.25 -0.2 672,947 + Rru_A0567 0.25 -0.2 672,947 + Rru_A0567 0.25 -0.2 672,947 + Rru_A0567 0.25 -0.2 672,948 - Rru_A0567 0.25 -0.2
Or see this region's nucleotide sequence