Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0563 and Rru_A0564 are separated by 188 nucleotides Rru_A0564 and Rru_A0565 are separated by 67 nucleotides Rru_A0565 and Rru_A0566 are separated by 185 nucleotides
Rru_A0563: Rru_A0563 - Twin-arginine translocation pathway signal (NCBI), at 665,587 to 666,852
_A0563
Rru_A0564: Rru_A0564 - hypothetical protein (NCBI), at 667,041 to 668,165
_A0564
Rru_A0565: Rru_A0565 - hypothetical protein (NCBI), at 668,233 to 668,568
_A0565
Rru_A0566: Rru_A0566 - hypothetical protein (NCBI), at 668,754 to 672,314
_A0566
Position (kb) 667
668
669 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 666.176 kb on + strand, within Rru_A0563 at 666.177 kb on - strand, within Rru_A0563 at 666.177 kb on - strand, within Rru_A0563 at 666.272 kb on + strand, within Rru_A0563 at 666.272 kb on + strand, within Rru_A0563 at 666.272 kb on + strand, within Rru_A0563 at 666.273 kb on - strand, within Rru_A0563 at 666.273 kb on - strand, within Rru_A0563 at 666.273 kb on - strand, within Rru_A0563 at 666.273 kb on - strand, within Rru_A0563 at 666.308 kb on - strand, within Rru_A0563 at 666.345 kb on + strand, within Rru_A0563 at 666.345 kb on + strand, within Rru_A0563 at 666.345 kb on + strand, within Rru_A0563 at 666.345 kb on + strand, within Rru_A0563 at 666.346 kb on - strand, within Rru_A0563 at 666.346 kb on - strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.348 kb on - strand, within Rru_A0563 at 666.348 kb on - strand, within Rru_A0563 at 666.348 kb on - strand, within Rru_A0563 at 666.368 kb on + strand, within Rru_A0563 at 666.368 kb on + strand, within Rru_A0563 at 666.368 kb on + strand, within Rru_A0563 at 666.369 kb on - strand, within Rru_A0563 at 666.369 kb on - strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.374 kb on + strand, within Rru_A0563 at 666.656 kb on + strand, within Rru_A0563 at 666.686 kb on + strand, within Rru_A0563 at 666.686 kb on + strand, within Rru_A0563 at 666.686 kb on + strand, within Rru_A0563 at 666.686 kb on + strand, within Rru_A0563 at 666.687 kb on - strand, within Rru_A0563 at 666.687 kb on - strand, within Rru_A0563 at 666.980 kb on + strand at 666.981 kb on - strand at 667.007 kb on - strand at 667.007 kb on - strand at 667.011 kb on + strand at 667.011 kb on + strand at 667.011 kb on + strand at 667.212 kb on + strand, within Rru_A0564 at 667.213 kb on - strand, within Rru_A0564 at 667.232 kb on + strand, within Rru_A0564 at 667.353 kb on - strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.869 kb on + strand, within Rru_A0564 at 667.940 kb on + strand, within Rru_A0564 at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.234 kb on + strand at 668.235 kb on - strand at 668.235 kb on - strand at 668.256 kb on + strand at 668.257 kb on - strand at 668.703 kb on - strand at 668.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 666,176 + Rru_A0563 0.47 -1.1 666,177 - Rru_A0563 0.47 -0.2 666,177 - Rru_A0563 0.47 -2.5 666,272 + Rru_A0563 0.54 -0.2 666,272 + Rru_A0563 0.54 -0.2 666,272 + Rru_A0563 0.54 -0.2 666,273 - Rru_A0563 0.54 -0.2 666,273 - Rru_A0563 0.54 -2.1 666,273 - Rru_A0563 0.54 -0.2 666,273 - Rru_A0563 0.54 -3.7 666,308 - Rru_A0563 0.57 -0.2 666,345 + Rru_A0563 0.60 -1.6 666,345 + Rru_A0563 0.60 -1.7 666,345 + Rru_A0563 0.60 -1.2 666,345 + Rru_A0563 0.60 -1.2 666,346 - Rru_A0563 0.60 -0.2 666,346 - Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,348 - Rru_A0563 0.60 -0.2 666,348 - Rru_A0563 0.60 -0.2 666,348 - Rru_A0563 0.60 -0.2 666,368 + Rru_A0563 0.62 -0.2 666,368 + Rru_A0563 0.62 -0.2 666,368 + Rru_A0563 0.62 -2.1 666,369 - Rru_A0563 0.62 -1.5 666,369 - Rru_A0563 0.62 -0.2 666,372 + Rru_A0563 0.62 -3.0 666,372 + Rru_A0563 0.62 -0.2 666,372 + Rru_A0563 0.62 -0.2 666,372 + Rru_A0563 0.62 -0.2 666,372 + Rru_A0563 0.62 -2.8 666,373 - Rru_A0563 0.62 -0.2 666,373 - Rru_A0563 0.62 -0.1 666,373 - Rru_A0563 0.62 -0.2 666,373 - Rru_A0563 0.62 -2.9 666,373 - Rru_A0563 0.62 -0.2 666,373 - Rru_A0563 0.62 -2.4 666,373 - Rru_A0563 0.62 -1.2 666,374 + Rru_A0563 0.62 -0.2 666,656 + Rru_A0563 0.84 -0.2 666,686 + Rru_A0563 0.87 -0.2 666,686 + Rru_A0563 0.87 -0.2 666,686 + Rru_A0563 0.87 -0.2 666,686 + Rru_A0563 0.87 -2.4 666,687 - Rru_A0563 0.87 -0.2 666,687 - Rru_A0563 0.87 -0.2 666,980 + -0.2 666,981 - -0.2 667,007 - -0.2 667,007 - -0.2 667,011 + -2.0 667,011 + -0.2 667,011 + -0.2 667,212 + Rru_A0564 0.15 +0.0 667,213 - Rru_A0564 0.15 -0.2 667,232 + Rru_A0564 0.17 -1.7 667,353 - Rru_A0564 0.28 -0.2 667,497 + Rru_A0564 0.41 -0.2 667,497 + Rru_A0564 0.41 -0.2 667,497 + Rru_A0564 0.41 -2.4 667,498 - Rru_A0564 0.41 -0.2 667,498 - Rru_A0564 0.41 -0.2 667,498 - Rru_A0564 0.41 -3.0 667,498 - Rru_A0564 0.41 -0.2 667,498 - Rru_A0564 0.41 -0.2 667,869 + Rru_A0564 0.74 -0.2 667,940 + Rru_A0564 0.80 -0.2 668,234 + -2.9 668,234 + -2.6 668,234 + -0.2 668,234 + -0.2 668,234 + -0.2 668,235 - -0.2 668,235 - -0.2 668,256 + -0.2 668,257 - -0.2 668,703 - -4.0 668,703 - -0.2
Or see this region's nucleotide sequence