Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0561 and Rru_A0562 are separated by 61 nucleotides Rru_A0562 and Rru_A0563 overlap by 4 nucleotides Rru_A0563 and Rru_A0564 are separated by 188 nucleotides
Rru_A0561: Rru_A0561 - Cytochrome bd ubiquinol oxidase, subunit II (NCBI), at 663,607 to 664,608
_A0561
Rru_A0562: Rru_A0562 - Peptidase S1 and S6, chymotrypsin/Hap (NCBI), at 664,670 to 665,590
_A0562
Rru_A0563: Rru_A0563 - Twin-arginine translocation pathway signal (NCBI), at 665,587 to 666,852
_A0563
Rru_A0564: Rru_A0564 - hypothetical protein (NCBI), at 667,041 to 668,165
_A0564
Position (kb) 665
666
667 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 664.671 kb on + strand at 664.672 kb on - strand at 664.827 kb on + strand, within Rru_A0562 at 665.067 kb on + strand, within Rru_A0562 at 665.781 kb on + strand, within Rru_A0563 at 665.856 kb on + strand, within Rru_A0563 at 665.856 kb on + strand, within Rru_A0563 at 665.857 kb on - strand, within Rru_A0563 at 665.858 kb on + strand, within Rru_A0563 at 665.858 kb on + strand, within Rru_A0563 at 665.859 kb on - strand, within Rru_A0563 at 665.859 kb on - strand, within Rru_A0563 at 665.859 kb on - strand, within Rru_A0563 at 665.948 kb on + strand, within Rru_A0563 at 665.948 kb on + strand, within Rru_A0563 at 665.949 kb on - strand, within Rru_A0563 at 666.008 kb on + strand, within Rru_A0563 at 666.176 kb on + strand, within Rru_A0563 at 666.177 kb on - strand, within Rru_A0563 at 666.177 kb on - strand, within Rru_A0563 at 666.272 kb on + strand, within Rru_A0563 at 666.272 kb on + strand, within Rru_A0563 at 666.272 kb on + strand, within Rru_A0563 at 666.273 kb on - strand, within Rru_A0563 at 666.273 kb on - strand, within Rru_A0563 at 666.273 kb on - strand, within Rru_A0563 at 666.273 kb on - strand, within Rru_A0563 at 666.308 kb on - strand, within Rru_A0563 at 666.345 kb on + strand, within Rru_A0563 at 666.345 kb on + strand, within Rru_A0563 at 666.345 kb on + strand, within Rru_A0563 at 666.345 kb on + strand, within Rru_A0563 at 666.346 kb on - strand, within Rru_A0563 at 666.346 kb on - strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.347 kb on + strand, within Rru_A0563 at 666.348 kb on - strand, within Rru_A0563 at 666.348 kb on - strand, within Rru_A0563 at 666.348 kb on - strand, within Rru_A0563 at 666.368 kb on + strand, within Rru_A0563 at 666.368 kb on + strand, within Rru_A0563 at 666.368 kb on + strand, within Rru_A0563 at 666.369 kb on - strand, within Rru_A0563 at 666.369 kb on - strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.372 kb on + strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.373 kb on - strand, within Rru_A0563 at 666.374 kb on + strand, within Rru_A0563 at 666.656 kb on + strand, within Rru_A0563 at 666.686 kb on + strand, within Rru_A0563 at 666.686 kb on + strand, within Rru_A0563 at 666.686 kb on + strand, within Rru_A0563 at 666.686 kb on + strand, within Rru_A0563 at 666.687 kb on - strand, within Rru_A0563 at 666.687 kb on - strand, within Rru_A0563 at 666.980 kb on + strand at 666.981 kb on - strand at 667.007 kb on - strand at 667.007 kb on - strand at 667.011 kb on + strand at 667.011 kb on + strand at 667.011 kb on + strand at 667.212 kb on + strand, within Rru_A0564 at 667.213 kb on - strand, within Rru_A0564 at 667.232 kb on + strand, within Rru_A0564 at 667.353 kb on - strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.497 kb on + strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564 at 667.498 kb on - strand, within Rru_A0564
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 664,671 + -0.2 664,672 - -0.2 664,827 + Rru_A0562 0.17 -0.2 665,067 + Rru_A0562 0.43 -2.6 665,781 + Rru_A0563 0.15 -0.3 665,856 + Rru_A0563 0.21 -2.3 665,856 + Rru_A0563 0.21 -0.2 665,857 - Rru_A0563 0.21 -0.2 665,858 + Rru_A0563 0.21 -0.1 665,858 + Rru_A0563 0.21 -0.2 665,859 - Rru_A0563 0.21 -0.2 665,859 - Rru_A0563 0.21 -2.4 665,859 - Rru_A0563 0.21 -1.7 665,948 + Rru_A0563 0.29 -0.2 665,948 + Rru_A0563 0.29 -0.9 665,949 - Rru_A0563 0.29 -0.2 666,008 + Rru_A0563 0.33 -0.2 666,176 + Rru_A0563 0.47 -1.1 666,177 - Rru_A0563 0.47 -0.2 666,177 - Rru_A0563 0.47 -2.5 666,272 + Rru_A0563 0.54 -0.2 666,272 + Rru_A0563 0.54 -0.2 666,272 + Rru_A0563 0.54 -0.2 666,273 - Rru_A0563 0.54 -0.2 666,273 - Rru_A0563 0.54 -2.1 666,273 - Rru_A0563 0.54 -0.2 666,273 - Rru_A0563 0.54 -3.7 666,308 - Rru_A0563 0.57 -0.2 666,345 + Rru_A0563 0.60 -1.6 666,345 + Rru_A0563 0.60 -1.7 666,345 + Rru_A0563 0.60 -1.2 666,345 + Rru_A0563 0.60 -1.2 666,346 - Rru_A0563 0.60 -0.2 666,346 - Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,347 + Rru_A0563 0.60 -0.2 666,348 - Rru_A0563 0.60 -0.2 666,348 - Rru_A0563 0.60 -0.2 666,348 - Rru_A0563 0.60 -0.2 666,368 + Rru_A0563 0.62 -0.2 666,368 + Rru_A0563 0.62 -0.2 666,368 + Rru_A0563 0.62 -2.1 666,369 - Rru_A0563 0.62 -1.5 666,369 - Rru_A0563 0.62 -0.2 666,372 + Rru_A0563 0.62 -3.0 666,372 + Rru_A0563 0.62 -0.2 666,372 + Rru_A0563 0.62 -0.2 666,372 + Rru_A0563 0.62 -0.2 666,372 + Rru_A0563 0.62 -2.8 666,373 - Rru_A0563 0.62 -0.2 666,373 - Rru_A0563 0.62 -0.1 666,373 - Rru_A0563 0.62 -0.2 666,373 - Rru_A0563 0.62 -2.9 666,373 - Rru_A0563 0.62 -0.2 666,373 - Rru_A0563 0.62 -2.4 666,373 - Rru_A0563 0.62 -1.2 666,374 + Rru_A0563 0.62 -0.2 666,656 + Rru_A0563 0.84 -0.2 666,686 + Rru_A0563 0.87 -0.2 666,686 + Rru_A0563 0.87 -0.2 666,686 + Rru_A0563 0.87 -0.2 666,686 + Rru_A0563 0.87 -2.4 666,687 - Rru_A0563 0.87 -0.2 666,687 - Rru_A0563 0.87 -0.2 666,980 + -0.2 666,981 - -0.2 667,007 - -0.2 667,007 - -0.2 667,011 + -2.0 667,011 + -0.2 667,011 + -0.2 667,212 + Rru_A0564 0.15 +0.0 667,213 - Rru_A0564 0.15 -0.2 667,232 + Rru_A0564 0.17 -1.7 667,353 - Rru_A0564 0.28 -0.2 667,497 + Rru_A0564 0.41 -0.2 667,497 + Rru_A0564 0.41 -0.2 667,497 + Rru_A0564 0.41 -2.4 667,498 - Rru_A0564 0.41 -0.2 667,498 - Rru_A0564 0.41 -0.2 667,498 - Rru_A0564 0.41 -3.0 667,498 - Rru_A0564 0.41 -0.2 667,498 - Rru_A0564 0.41 -0.2
Or see this region's nucleotide sequence