Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0546

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0545 and Rru_A0546 are separated by 585 nucleotidesRru_A0546 and Rru_A0547 are separated by 195 nucleotidesRru_A0547 and Rru_A0548 are separated by 28 nucleotides Rru_A0545: Rru_A0545 - Flagellar FliF M-ring protein (NCBI), at 640,864 to 642,519 _A0545 Rru_A0546: Rru_A0546 - hypothetical protein (NCBI), at 643,105 to 645,090 _A0546 Rru_A0547: Rru_A0547 - Flagellar hook capping protein (NCBI), at 645,286 to 646,023 _A0547 Rru_A0548: Rru_A0548 - Flagellar hook-length control protein (NCBI), at 646,052 to 647,875 _A0548 Position (kb) 643 644 645 646Strain fitness (log2 ratio) -3 -2 -1 0 1at 642.150 kb on + strand, within Rru_A0545at 642.150 kb on + strand, within Rru_A0545at 642.150 kb on + strand, within Rru_A0545at 642.150 kb on + strand, within Rru_A0545at 642.151 kb on - strand, within Rru_A0545at 642.151 kb on - strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.156 kb on + strand, within Rru_A0545at 642.266 kb on - strand, within Rru_A0545at 642.425 kb on + strandat 642.426 kb on - strandat 642.603 kb on - strandat 642.603 kb on - strandat 642.641 kb on - strandat 642.641 kb on - strandat 642.667 kb on + strandat 642.667 kb on + strandat 642.946 kb on + strandat 643.175 kb on + strandat 643.197 kb on + strandat 643.197 kb on + strandat 643.197 kb on + strandat 643.198 kb on - strandat 643.294 kb on + strandat 643.295 kb on - strandat 643.455 kb on - strand, within Rru_A0546at 643.467 kb on + strand, within Rru_A0546at 643.467 kb on + strand, within Rru_A0546at 643.468 kb on - strand, within Rru_A0546at 643.487 kb on + strand, within Rru_A0546at 643.488 kb on - strand, within Rru_A0546at 643.488 kb on - strand, within Rru_A0546at 643.499 kb on + strand, within Rru_A0546at 643.539 kb on - strand, within Rru_A0546at 643.539 kb on - strand, within Rru_A0546at 643.539 kb on - strand, within Rru_A0546at 643.597 kb on - strand, within Rru_A0546at 643.597 kb on - strand, within Rru_A0546at 643.664 kb on + strand, within Rru_A0546at 643.918 kb on - strand, within Rru_A0546at 644.027 kb on - strand, within Rru_A0546at 644.058 kb on + strand, within Rru_A0546at 644.058 kb on + strand, within Rru_A0546at 644.058 kb on + strand, within Rru_A0546at 644.058 kb on + strand, within Rru_A0546at 644.058 kb on + strand, within Rru_A0546at 644.058 kb on + strand, within Rru_A0546at 644.059 kb on - strand, within Rru_A0546at 644.059 kb on - strand, within Rru_A0546at 644.059 kb on - strand, within Rru_A0546at 644.059 kb on - strand, within Rru_A0546at 644.059 kb on - strand, within Rru_A0546at 644.060 kb on + strand, within Rru_A0546at 644.060 kb on + strand, within Rru_A0546at 644.061 kb on - strand, within Rru_A0546at 644.072 kb on + strand, within Rru_A0546at 644.226 kb on + strand, within Rru_A0546at 644.226 kb on + strand, within Rru_A0546at 644.226 kb on + strand, within Rru_A0546at 644.227 kb on - strand, within Rru_A0546at 644.227 kb on - strand, within Rru_A0546at 644.228 kb on + strand, within Rru_A0546at 644.228 kb on + strand, within Rru_A0546at 644.229 kb on - strand, within Rru_A0546at 644.229 kb on - strand, within Rru_A0546at 644.309 kb on + strand, within Rru_A0546at 644.309 kb on + strand, within Rru_A0546at 644.310 kb on - strand, within Rru_A0546at 644.310 kb on - strand, within Rru_A0546at 644.334 kb on + strand, within Rru_A0546at 644.334 kb on + strand, within Rru_A0546at 644.408 kb on + strand, within Rru_A0546at 644.408 kb on + strand, within Rru_A0546at 644.409 kb on - strand, within Rru_A0546at 644.409 kb on - strand, within Rru_A0546at 644.409 kb on - strand, within Rru_A0546at 644.418 kb on + strand, within Rru_A0546at 644.419 kb on - strand, within Rru_A0546at 644.475 kb on + strand, within Rru_A0546at 644.475 kb on + strand, within Rru_A0546at 644.475 kb on + strand, within Rru_A0546at 644.565 kb on + strand, within Rru_A0546at 644.565 kb on + strand, within Rru_A0546at 644.565 kb on + strand, within Rru_A0546at 644.566 kb on - strand, within Rru_A0546at 644.566 kb on - strand, within Rru_A0546at 644.597 kb on + strand, within Rru_A0546at 644.597 kb on + strand, within Rru_A0546at 644.597 kb on + strand, within Rru_A0546at 644.597 kb on + strand, within Rru_A0546at 644.598 kb on - strand, within Rru_A0546at 644.598 kb on - strand, within Rru_A0546at 644.598 kb on - strand, within Rru_A0546at 644.598 kb on - strand, within Rru_A0546at 644.600 kb on + strand, within Rru_A0546at 644.600 kb on + strand, within Rru_A0546at 644.600 kb on + strand, within Rru_A0546at 644.601 kb on - strand, within Rru_A0546at 644.601 kb on - strand, within Rru_A0546at 644.601 kb on - strand, within Rru_A0546at 644.634 kb on + strand, within Rru_A0546at 644.635 kb on - strand, within Rru_A0546at 644.636 kb on + strand, within Rru_A0546at 644.636 kb on + strand, within Rru_A0546at 644.637 kb on - strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.711 kb on + strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.712 kb on - strand, within Rru_A0546at 644.714 kb on + strand, within Rru_A0546at 644.715 kb on - strand, within Rru_A0546at 644.735 kb on + strand, within Rru_A0546at 644.736 kb on - strand, within Rru_A0546at 644.774 kb on + strand, within Rru_A0546at 644.774 kb on + strand, within Rru_A0546at 644.775 kb on - strand, within Rru_A0546at 644.775 kb on - strand, within Rru_A0546at 644.924 kb on + strandat 644.924 kb on + strandat 644.925 kb on - strandat 644.985 kb on - strandat 644.994 kb on + strandat 645.080 kb on + strandat 645.080 kb on + strandat 645.081 kb on - strandat 645.081 kb on - strandat 645.156 kb on + strandat 645.217 kb on - strandat 645.267 kb on - strandat 645.354 kb on + strandat 645.355 kb on - strandat 645.514 kb on - strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.518 kb on + strand, within Rru_A0547at 645.519 kb on - strand, within Rru_A0547at 645.519 kb on - strand, within Rru_A0547at 645.546 kb on - strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.674 kb on + strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.675 kb on - strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.731 kb on + strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.732 kb on - strand, within Rru_A0547at 645.856 kb on - strand, within Rru_A0547at 645.856 kb on - strand, within Rru_A0547at 645.933 kb on + strand, within Rru_A0547at 645.934 kb on - strand, within Rru_A0547at 646.012 kb on + strandat 646.013 kb on - strandat 646.013 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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642,150 + Rru_A0545 0.78 -2.7
642,150 + Rru_A0545 0.78 -0.1
642,150 + Rru_A0545 0.78 -0.9
642,150 + Rru_A0545 0.78 -0.1
642,151 - Rru_A0545 0.78 -0.1
642,151 - Rru_A0545 0.78 +0.2
642,156 + Rru_A0545 0.78 -0.9
642,156 + Rru_A0545 0.78 -0.1
642,156 + Rru_A0545 0.78 -0.1
642,156 + Rru_A0545 0.78 -1.1
642,156 + Rru_A0545 0.78 -0.1
642,156 + Rru_A0545 0.78 -1.1
642,156 + Rru_A0545 0.78 -0.1
642,156 + Rru_A0545 0.78 -1.8
642,156 + Rru_A0545 0.78 -2.8
642,266 - Rru_A0545 0.85 -0.1
642,425 + -0.1
642,426 - -1.1
642,603 - -0.1
642,603 - -1.1
642,641 - -0.1
642,641 - -1.8
642,667 + -1.2
642,667 + -0.1
642,946 + -0.2
643,175 + -0.2
643,197 + -0.2
643,197 + -0.2
643,197 + -0.2
643,198 - -0.2
643,294 + +0.8
643,295 - -0.2
643,455 - Rru_A0546 0.18 -0.2
643,467 + Rru_A0546 0.18 -0.2
643,467 + Rru_A0546 0.18 -0.2
643,468 - Rru_A0546 0.18 -0.2
643,487 + Rru_A0546 0.19 -0.2
643,488 - Rru_A0546 0.19 -1.7
643,488 - Rru_A0546 0.19 -2.0
643,499 + Rru_A0546 0.20 -0.2
643,539 - Rru_A0546 0.22 -2.4
643,539 - Rru_A0546 0.22 -0.2
643,539 - Rru_A0546 0.22 -1.2
643,597 - Rru_A0546 0.25 -0.2
643,597 - Rru_A0546 0.25 -1.1
643,664 + Rru_A0546 0.28 -1.2
643,918 - Rru_A0546 0.41 -1.2
644,027 - Rru_A0546 0.46 -0.2
644,058 + Rru_A0546 0.48 -0.2
644,058 + Rru_A0546 0.48 -0.2
644,058 + Rru_A0546 0.48 -0.2
644,058 + Rru_A0546 0.48 -0.2
644,058 + Rru_A0546 0.48 -0.2
644,058 + Rru_A0546 0.48 -0.2
644,059 - Rru_A0546 0.48 -1.0
644,059 - Rru_A0546 0.48 -0.2
644,059 - Rru_A0546 0.48 -2.2
644,059 - Rru_A0546 0.48 -0.2
644,059 - Rru_A0546 0.48 -0.2
644,060 + Rru_A0546 0.48 -0.2
644,060 + Rru_A0546 0.48 -0.2
644,061 - Rru_A0546 0.48 -0.2
644,072 + Rru_A0546 0.49 -0.2
644,226 + Rru_A0546 0.56 -2.4
644,226 + Rru_A0546 0.56 -0.2
644,226 + Rru_A0546 0.56 -0.2
644,227 - Rru_A0546 0.56 -0.2
644,227 - Rru_A0546 0.56 -0.2
644,228 + Rru_A0546 0.57 -0.2
644,228 + Rru_A0546 0.57 -0.2
644,229 - Rru_A0546 0.57 -0.5
644,229 - Rru_A0546 0.57 -0.9
644,309 + Rru_A0546 0.61 -0.2
644,309 + Rru_A0546 0.61 -0.2
644,310 - Rru_A0546 0.61 -1.6
644,310 - Rru_A0546 0.61 -0.2
644,334 + Rru_A0546 0.62 -0.2
644,334 + Rru_A0546 0.62 -0.2
644,408 + Rru_A0546 0.66 -0.2
644,408 + Rru_A0546 0.66 -0.2
644,409 - Rru_A0546 0.66 -0.2
644,409 - Rru_A0546 0.66 -0.2
644,409 - Rru_A0546 0.66 -1.5
644,418 + Rru_A0546 0.66 -0.2
644,419 - Rru_A0546 0.66 -0.2
644,475 + Rru_A0546 0.69 -0.2
644,475 + Rru_A0546 0.69 +0.6
644,475 + Rru_A0546 0.69 -0.2
644,565 + Rru_A0546 0.74 -1.7
644,565 + Rru_A0546 0.74 -0.2
644,565 + Rru_A0546 0.74 -2.5
644,566 - Rru_A0546 0.74 -1.9
644,566 - Rru_A0546 0.74 -0.2
644,597 + Rru_A0546 0.75 -1.7
644,597 + Rru_A0546 0.75 -0.2
644,597 + Rru_A0546 0.75 -0.2
644,597 + Rru_A0546 0.75 -2.1
644,598 - Rru_A0546 0.75 -1.2
644,598 - Rru_A0546 0.75 -0.7
644,598 - Rru_A0546 0.75 -0.2
644,598 - Rru_A0546 0.75 -2.6
644,600 + Rru_A0546 0.75 -0.2
644,600 + Rru_A0546 0.75 -2.6
644,600 + Rru_A0546 0.75 -0.2
644,601 - Rru_A0546 0.75 -1.7
644,601 - Rru_A0546 0.75 -2.7
644,601 - Rru_A0546 0.75 -1.2
644,634 + Rru_A0546 0.77 -0.2
644,635 - Rru_A0546 0.77 -0.2
644,636 + Rru_A0546 0.77 -0.2
644,636 + Rru_A0546 0.77 -1.2
644,637 - Rru_A0546 0.77 -0.2
644,711 + Rru_A0546 0.81 -0.2
644,711 + Rru_A0546 0.81 -0.2
644,711 + Rru_A0546 0.81 -0.2
644,711 + Rru_A0546 0.81 -1.9
644,711 + Rru_A0546 0.81 -0.2
644,711 + Rru_A0546 0.81 -0.2
644,711 + Rru_A0546 0.81 -0.2
644,711 + Rru_A0546 0.81 -0.5
644,711 + Rru_A0546 0.81 -1.9
644,712 - Rru_A0546 0.81 -0.2
644,712 - Rru_A0546 0.81 -0.2
644,712 - Rru_A0546 0.81 -0.2
644,712 - Rru_A0546 0.81 -0.2
644,712 - Rru_A0546 0.81 -0.2
644,712 - Rru_A0546 0.81 -0.2
644,712 - Rru_A0546 0.81 -1.1
644,712 - Rru_A0546 0.81 -0.2
644,712 - Rru_A0546 0.81 -0.2
644,712 - Rru_A0546 0.81 -1.2
644,712 - Rru_A0546 0.81 -1.2
644,712 - Rru_A0546 0.81 -0.2
644,714 + Rru_A0546 0.81 -0.2
644,715 - Rru_A0546 0.81 -0.4
644,735 + Rru_A0546 0.82 -1.8
644,736 - Rru_A0546 0.82 -0.3
644,774 + Rru_A0546 0.84 -0.2
644,774 + Rru_A0546 0.84 -1.4
644,775 - Rru_A0546 0.84 -0.2
644,775 - Rru_A0546 0.84 -0.2
644,924 + -0.2
644,924 + -1.2
644,925 - -2.0
644,985 - -1.2
644,994 + -0.2
645,080 + -0.2
645,080 + -2.7
645,081 - -0.2
645,081 - -1.7
645,156 + -0.2
645,217 - -0.2
645,267 - -0.2
645,354 + -0.1
645,355 - -0.2
645,514 - Rru_A0547 0.31 -0.2
645,518 + Rru_A0547 0.31 -1.2
645,518 + Rru_A0547 0.31 -0.2
645,518 + Rru_A0547 0.31 -0.2
645,518 + Rru_A0547 0.31 -0.2
645,519 - Rru_A0547 0.32 -0.2
645,519 - Rru_A0547 0.32 -0.2
645,546 - Rru_A0547 0.35 -1.2
645,674 + Rru_A0547 0.53 -0.2
645,674 + Rru_A0547 0.53 -0.2
645,674 + Rru_A0547 0.53 -0.2
645,674 + Rru_A0547 0.53 -0.2
645,674 + Rru_A0547 0.53 -1.5
645,674 + Rru_A0547 0.53 -2.2
645,675 - Rru_A0547 0.53 -0.2
645,675 - Rru_A0547 0.53 -0.2
645,675 - Rru_A0547 0.53 -0.2
645,731 + Rru_A0547 0.60 -2.0
645,731 + Rru_A0547 0.60 -0.2
645,731 + Rru_A0547 0.60 -0.2
645,732 - Rru_A0547 0.60 -0.2
645,732 - Rru_A0547 0.60 -2.3
645,732 - Rru_A0547 0.60 -0.2
645,732 - Rru_A0547 0.60 -0.2
645,732 - Rru_A0547 0.60 -1.8
645,732 - Rru_A0547 0.60 -0.2
645,856 - Rru_A0547 0.77 -0.2
645,856 - Rru_A0547 0.77 -0.2
645,933 + Rru_A0547 0.88 -1.7
645,934 - Rru_A0547 0.88 -0.2
646,012 + -0.2
646,013 - -0.2
646,013 - -0.2

Or see this region's nucleotide sequence