Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0528 and Rru_A0529 are separated by 10 nucleotides Rru_A0529 and Rru_A0530 are separated by 126 nucleotides
Rru_A0528: Rru_A0528 - Heat shock protein DnaJ-like (NCBI), at 622,611 to 623,867
_A0528
Rru_A0529: Rru_A0529 - hypothetical protein (NCBI), at 623,878 to 624,309
_A0529
Rru_A0530: Rru_A0530 - Ferredoxin--NADP+ reductase (NCBI), at 624,436 to 625,209
_A0530
Position (kb) 623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 622.894 kb on + strand, within Rru_A0528 at 622.895 kb on - strand, within Rru_A0528 at 622.895 kb on - strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.943 kb on + strand, within Rru_A0528 at 622.944 kb on - strand, within Rru_A0528 at 623.530 kb on + strand, within Rru_A0528 at 623.530 kb on + strand, within Rru_A0528 at 623.530 kb on + strand, within Rru_A0528 at 623.531 kb on - strand, within Rru_A0528 at 623.659 kb on + strand, within Rru_A0528 at 623.659 kb on + strand, within Rru_A0528 at 623.660 kb on - strand, within Rru_A0528 at 623.695 kb on + strand, within Rru_A0528 at 623.695 kb on + strand, within Rru_A0528 at 623.696 kb on - strand, within Rru_A0528 at 623.696 kb on - strand, within Rru_A0528 at 623.696 kb on - strand, within Rru_A0528 at 623.834 kb on - strand at 623.834 kb on - strand at 623.836 kb on + strand at 623.836 kb on + strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.837 kb on - strand at 623.862 kb on - strand at 624.127 kb on - strand, within Rru_A0529 at 624.128 kb on + strand, within Rru_A0529 at 624.128 kb on + strand, within Rru_A0529 at 624.208 kb on + strand, within Rru_A0529 at 624.208 kb on + strand, within Rru_A0529 at 624.208 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.245 kb on + strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.246 kb on - strand, within Rru_A0529 at 624.340 kb on + strand at 624.348 kb on + strand at 624.348 kb on + strand at 624.349 kb on - strand at 624.349 kb on - strand at 624.388 kb on - strand at 624.437 kb on + strand at 624.437 kb on + strand at 625.290 kb on - strand at 625.290 kb on - strand at 625.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 622,894 + Rru_A0528 0.23 -2.1 622,895 - Rru_A0528 0.23 -1.7 622,895 - Rru_A0528 0.23 -0.1 622,943 + Rru_A0528 0.26 -1.0 622,943 + Rru_A0528 0.26 -0.1 622,943 + Rru_A0528 0.26 -0.1 622,943 + Rru_A0528 0.26 -0.1 622,943 + Rru_A0528 0.26 -0.1 622,944 - Rru_A0528 0.26 +0.3 623,530 + Rru_A0528 0.73 -1.0 623,530 + Rru_A0528 0.73 -1.1 623,530 + Rru_A0528 0.73 -1.6 623,531 - Rru_A0528 0.73 -0.1 623,659 + Rru_A0528 0.83 -0.1 623,659 + Rru_A0528 0.83 -0.1 623,660 - Rru_A0528 0.83 -0.1 623,695 + Rru_A0528 0.86 -0.9 623,695 + Rru_A0528 0.86 -1.3 623,696 - Rru_A0528 0.86 -0.2 623,696 - Rru_A0528 0.86 -1.2 623,696 - Rru_A0528 0.86 -0.2 623,834 - -0.2 623,834 - -2.1 623,836 + -0.2 623,836 + -1.8 623,837 - -0.2 623,837 - -0.2 623,837 - -0.2 623,837 - +1.8 623,837 - -0.2 623,837 - -0.2 623,862 - -1.1 624,127 - Rru_A0529 0.58 -0.2 624,128 + Rru_A0529 0.58 -1.2 624,128 + Rru_A0529 0.58 -0.2 624,208 + Rru_A0529 0.76 -0.2 624,208 + Rru_A0529 0.76 -0.2 624,208 + Rru_A0529 0.76 -0.2 624,245 + Rru_A0529 0.85 -0.2 624,245 + Rru_A0529 0.85 -2.1 624,245 + Rru_A0529 0.85 -0.2 624,245 + Rru_A0529 0.85 -0.2 624,245 + Rru_A0529 0.85 -0.2 624,246 - Rru_A0529 0.85 -0.2 624,246 - Rru_A0529 0.85 -0.2 624,246 - Rru_A0529 0.85 -0.2 624,246 - Rru_A0529 0.85 +0.9 624,246 - Rru_A0529 0.85 -0.2 624,246 - Rru_A0529 0.85 -1.9 624,246 - Rru_A0529 0.85 -0.2 624,246 - Rru_A0529 0.85 -0.2 624,340 + -2.2 624,348 + -0.2 624,348 + -0.2 624,349 - -2.8 624,349 - -0.2 624,388 - -2.5 624,437 + -0.1 624,437 + -0.2 625,290 - -0.2 625,290 - -0.6 625,300 - +0.7
Or see this region's nucleotide sequence