Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0511

Experiment: L-Malic Acid (C) with ammonium chloride; high light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic Acid (C) with ammonium chloride; high light
603,010	+				-0.2
603,010	+				-0.2
603,011	-				-1.9
603,012	+				-0.2
603,013	-				-0.9
603,013	-				-0.2
603,131	-				-0.2
603,245	+				-0.2
603,245	+				-0.2
603,246	-				-1.7
603,249	-				-0.3
603,249	-				-0.2
603,254	+				-0.2
603,254	+				-0.2
603,279	+				-0.2
603,279	+				-2.1
603,279	+				-0.2
603,280	-				-1.7
603,320	+				-0.2
603,321	-				-0.2
603,321	-				-1.2
603,510	+		Rru_A0509	0.58	-1.2
603,542	+		Rru_A0509	0.68	-0.2
603,543	-		Rru_A0509	0.69	-0.2
603,572	+		Rru_A0509	0.77	-0.2
603,573	-		Rru_A0509	0.78	-0.2
603,643	-				-0.2
603,657	-				-0.2
603,657	-				-0.3
603,657	-				-1.4
603,761	+		Rru_A0510	0.36	-0.2
603,761	+		Rru_A0510	0.36	-0.1
603,761	+		Rru_A0510	0.36	-0.2
603,761	+		Rru_A0510	0.36	-0.2
603,762	-		Rru_A0510	0.36	-0.2
603,863	+		Rru_A0510	0.70	-2.5
603,863	+		Rru_A0510	0.70	-0.9
603,864	-		Rru_A0510	0.70	-0.2
603,864	-		Rru_A0510	0.70	-0.2
603,887	+		Rru_A0510	0.78	-0.2
603,888	-		Rru_A0510	0.78	-2.2
603,888	-		Rru_A0510	0.78	-0.2
603,951	+				-0.2
603,979	+				-1.7
604,046	-				-0.2
604,046	-				-0.2
604,060	+				-0.6
604,108	+				-0.2
604,108	+				-0.2
604,109	-				-0.8
604,109	-				-0.2
604,133	+				-0.2
604,134	-				-0.2
604,184	-				-0.2
604,275	+		Rru_A0511	0.12	-0.2
604,276	-		Rru_A0511	0.12	-2.6
604,276	-		Rru_A0511	0.12	-0.2
604,276	-		Rru_A0511	0.12	-0.2
604,276	-		Rru_A0511	0.12	-0.2
604,276	-		Rru_A0511	0.12	-0.2
604,278	-		Rru_A0511	0.12	+3.4
604,290	+		Rru_A0511	0.12	-0.2
604,291	-		Rru_A0511	0.13	-1.3
604,291	-		Rru_A0511	0.13	-0.2
604,302	+		Rru_A0511	0.13	-1.7
604,303	-		Rru_A0511	0.13	-1.3
604,303	-		Rru_A0511	0.13	-0.2
604,305	-		Rru_A0511	0.13	-0.2
604,305	-		Rru_A0511	0.13	-0.2
604,351	-		Rru_A0511	0.15	-2.3
604,469	+		Rru_A0511	0.19	-0.2
604,555	-		Rru_A0511	0.23	-0.2
604,567	+		Rru_A0511	0.23	-0.2
604,604	+		Rru_A0511	0.25	-0.2
604,605	-		Rru_A0511	0.25	-0.2
604,633	+		Rru_A0511	0.26	-0.2
604,634	-		Rru_A0511	0.26	-0.2
604,727	-		Rru_A0511	0.29	-1.7
604,756	+		Rru_A0511	0.30	-0.2
604,757	-		Rru_A0511	0.30	-0.2
604,770	+		Rru_A0511	0.31	-0.2
604,776	+		Rru_A0511	0.31	-0.2
604,777	-		Rru_A0511	0.31	-1.7
604,788	+		Rru_A0511	0.32	-2.0
604,789	-		Rru_A0511	0.32	+0.2
604,790	+		Rru_A0511	0.32	-1.2
604,790	+		Rru_A0511	0.32	-0.2
604,790	+		Rru_A0511	0.32	-0.2
604,790	+		Rru_A0511	0.32	-0.2
604,790	+		Rru_A0511	0.32	-0.2
604,790	+		Rru_A0511	0.32	-1.2
604,790	+		Rru_A0511	0.32	-2.4
604,790	+		Rru_A0511	0.32	-0.2
604,790	+		Rru_A0511	0.32	-0.2
604,790	+		Rru_A0511	0.32	-0.2
604,791	-		Rru_A0511	0.32	-0.2
604,791	-		Rru_A0511	0.32	-3.3
604,791	-		Rru_A0511	0.32	-0.2
604,805	+		Rru_A0511	0.32	-1.3
604,805	+		Rru_A0511	0.32	-0.2
604,805	+		Rru_A0511	0.32	-0.2
604,806	-		Rru_A0511	0.32	-1.2
604,806	-		Rru_A0511	0.32	-0.2
604,806	-		Rru_A0511	0.32	-0.2
604,806	-		Rru_A0511	0.32	-0.2
604,806	-		Rru_A0511	0.32	-0.2
604,827	+		Rru_A0511	0.33	-0.2
604,877	+		Rru_A0511	0.35	-2.0
604,877	+		Rru_A0511	0.35	-1.3
604,877	+		Rru_A0511	0.35	-0.2
604,998	+		Rru_A0511	0.40	-1.2
604,998	+		Rru_A0511	0.40	-0.2
604,999	-		Rru_A0511	0.40	-1.7
604,999	-		Rru_A0511	0.40	-0.2
604,999	-		Rru_A0511	0.40	-1.2
604,999	-		Rru_A0511	0.40	-0.2
605,001	+		Rru_A0511	0.40	-2.4
605,001	+		Rru_A0511	0.40	-0.2
605,041	+		Rru_A0511	0.41	-0.2
605,106	+		Rru_A0511	0.44	-1.7
605,107	-		Rru_A0511	0.44	-0.2
605,107	-		Rru_A0511	0.44	-1.6
605,107	-		Rru_A0511	0.44	-0.2
605,152	+		Rru_A0511	0.46	-0.2
605,152	+		Rru_A0511	0.46	-1.3
605,152	+		Rru_A0511	0.46	-0.2
605,153	-		Rru_A0511	0.46	-2.1
605,153	-		Rru_A0511	0.46	-2.8
605,153	-		Rru_A0511	0.46	-0.7
605,153	-		Rru_A0511	0.46	-0.2
605,153	-		Rru_A0511	0.46	-0.2
605,217	+		Rru_A0511	0.48	-0.2
605,217	+		Rru_A0511	0.48	-0.2
605,218	-		Rru_A0511	0.48	-0.2
605,218	-		Rru_A0511	0.48	-0.2
605,218	-		Rru_A0511	0.48	-1.6
605,311	+		Rru_A0511	0.52	-0.2
605,311	+		Rru_A0511	0.52	-1.8
605,311	+		Rru_A0511	0.52	-0.8
605,312	-		Rru_A0511	0.52	-0.2
605,312	-		Rru_A0511	0.52	-0.2
605,312	-		Rru_A0511	0.52	-0.2
605,388	+		Rru_A0511	0.55	-0.2
605,389	-		Rru_A0511	0.55	-0.2
605,396	+		Rru_A0511	0.55	-0.2
605,396	+		Rru_A0511	0.55	+0.2
605,396	+		Rru_A0511	0.55	-0.2
605,397	-		Rru_A0511	0.55	-0.2
605,397	-		Rru_A0511	0.55	-1.7
605,398	+		Rru_A0511	0.55	-0.2
605,398	+		Rru_A0511	0.55	-1.1
605,398	+		Rru_A0511	0.55	-1.2
605,398	+		Rru_A0511	0.55	-0.2
605,399	-		Rru_A0511	0.55	-0.2
605,399	-		Rru_A0511	0.55	-0.2
605,399	-		Rru_A0511	0.55	-0.2
605,399	-		Rru_A0511	0.55	-1.5
605,399	-		Rru_A0511	0.55	-0.2
605,399	-		Rru_A0511	0.55	-1.8
605,399	-		Rru_A0511	0.55	-0.2
605,400	-		Rru_A0511	0.55	-0.2
605,401	+		Rru_A0511	0.55	-2.2
605,401	+		Rru_A0511	0.55	-2.6
605,401	+		Rru_A0511	0.55	-1.4
605,401	+		Rru_A0511	0.55	-0.2
605,402	-		Rru_A0511	0.55	-1.2
605,469	+		Rru_A0511	0.58	-2.6
605,469	+		Rru_A0511	0.58	-1.2
605,503	+		Rru_A0511	0.59	-1.5
605,503	+		Rru_A0511	0.59	-2.2
605,503	+		Rru_A0511	0.59	-1.2
605,503	+		Rru_A0511	0.59	-0.2
605,503	+		Rru_A0511	0.59	-1.2
605,504	-		Rru_A0511	0.59	-0.2
605,504	-		Rru_A0511	0.59	-0.2
605,504	-		Rru_A0511	0.59	-0.2
605,504	-		Rru_A0511	0.59	-1.4
605,504	-		Rru_A0511	0.59	-0.2
605,504	-		Rru_A0511	0.59	-0.2
605,504	-		Rru_A0511	0.59	-0.2
605,524	+		Rru_A0511	0.60	-0.2
605,524	+		Rru_A0511	0.60	-0.2
605,525	-		Rru_A0511	0.60	-0.2
605,525	-		Rru_A0511	0.60	-2.2
605,661	+		Rru_A0511	0.65	-0.2
605,697	+		Rru_A0511	0.66	-0.2
605,698	-		Rru_A0511	0.66	-0.2
605,698	-		Rru_A0511	0.66	-0.2
605,792	-		Rru_A0511	0.70	-0.2
605,845	+		Rru_A0511	0.72	-1.4
605,845	+		Rru_A0511	0.72	-0.2
605,845	+		Rru_A0511	0.72	-0.2
605,846	-		Rru_A0511	0.72	-1.7
605,846	-		Rru_A0511	0.72	+0.5
605,848	+		Rru_A0511	0.72	-0.3
605,848	+		Rru_A0511	0.72	-1.2
605,848	+		Rru_A0511	0.72	-0.7
605,848	+		Rru_A0511	0.72	-0.2
605,849	-		Rru_A0511	0.72	-1.8
605,849	-		Rru_A0511	0.72	+0.2
605,849	-		Rru_A0511	0.72	-0.2
605,849	-		Rru_A0511	0.72	-0.2
605,849	-		Rru_A0511	0.72	-0.2
605,886	-		Rru_A0511	0.74	-0.2
605,952	+		Rru_A0511	0.76	-2.0
605,994	-		Rru_A0511	0.78	-0.2
605,994	-		Rru_A0511	0.78	-0.2
606,205	+		Rru_A0511	0.86	-0.2
606,205	+		Rru_A0511	0.86	-0.2
606,292	+		Rru_A0511	0.89	-1.3
606,293	-		Rru_A0511	0.89	-0.2
606,343	+				-0.2
606,413	-				-0.2
606,413	-				-0.2
606,413	-				-0.7
606,501	+				-0.2
606,501	+				-0.5
606,501	+				-1.2
606,501	+				-0.2
606,501	+				-0.2
606,501	+				-0.2
606,501	+				-0.2
606,502	-				-0.2
606,502	-				+0.1
606,502	-				-1.2
606,735	+		Rru_A0512	0.17	-0.2
606,735	+		Rru_A0512	0.17	-0.2
606,735	+		Rru_A0512	0.17	-0.2
606,735	+		Rru_A0512	0.17	-0.2
606,735	+		Rru_A0512	0.17	-0.2
606,736	-		Rru_A0512	0.17	-0.2
606,736	-		Rru_A0512	0.17	-0.2
606,736	-		Rru_A0512	0.17	-0.2
606,736	-		Rru_A0512	0.17	-0.2
606,759	+		Rru_A0512	0.20	-0.2
606,759	+		Rru_A0512	0.20	-0.4
606,759	+		Rru_A0512	0.20	-0.2
606,759	+		Rru_A0512	0.20	-1.3
606,760	-		Rru_A0512	0.20	-0.2
606,760	-		Rru_A0512	0.20	-0.2
606,760	-		Rru_A0512	0.20	-1.2
606,760	-		Rru_A0512	0.20	-0.2
606,760	-		Rru_A0512	0.20	-0.2
606,814	+		Rru_A0512	0.25	-0.2
606,815	-		Rru_A0512	0.25	-1.3
606,853	+		Rru_A0512	0.29	-0.1
606,854	-		Rru_A0512	0.29	+0.2
607,013	-		Rru_A0512	0.46	-0.2
607,013	-		Rru_A0512	0.46	-0.2
607,015	-		Rru_A0512	0.46	-0.2
607,033	+		Rru_A0512	0.48	-0.2
607,070	-		Rru_A0512	0.52	-0.2
607,070	-		Rru_A0512	0.52	-0.2
607,070	-		Rru_A0512	0.52	-1.7
607,070	-		Rru_A0512	0.52	-0.2
607,070	-		Rru_A0512	0.52	-0.2
607,091	-		Rru_A0512	0.54	-0.2
607,091	-		Rru_A0512	0.54	-0.2
607,262	+		Rru_A0512	0.72	-1.1
607,265	-		Rru_A0512	0.72	-2.7
607,293	+		Rru_A0512	0.75	-0.2
607,316	-		Rru_A0512	0.77	-0.2
607,406	+		Rru_A0512	0.87	-1.0
607,406	+		Rru_A0512	0.87	-0.2
607,495	-				-0.2
607,509	-				-0.2
607,509	-				-0.2
607,509	-				-0.2
607,556	+				-1.2
607,556	+				-0.2
607,556	+				-1.2
607,557	-				-0.2
607,561	+				-1.2
607,561	+				-0.2
607,561	+				-2.2
607,562	-				-0.2