Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0475 and Rru_A0476 are separated by 194 nucleotides Rru_A0476 and Rru_AR0016 are separated by 86 nucleotides Rru_AR0016 and Rru_A0477 are separated by 140 nucleotides
Rru_A0475: Rru_A0475 - NADH:flavin oxidoreductase/NADH oxidase (NCBI), at 557,746 to 558,843
_A0475
Rru_A0476: Rru_A0476 - OsmC-like protein (NCBI), at 559,038 to 559,610
_A0476
Rru_AR0016: Rru_AR0016 - tRNA-Lys (NCBI), at 559,697 to 559,772
_AR0016
Rru_A0477: Rru_A0477 - hypothetical protein (NCBI), at 559,913 to 560,608
_A0477
Position (kb) 559
560 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 558.048 kb on + strand, within Rru_A0475 at 558.048 kb on + strand, within Rru_A0475 at 558.048 kb on + strand, within Rru_A0475 at 558.049 kb on - strand, within Rru_A0475 at 558.056 kb on + strand, within Rru_A0475 at 558.057 kb on - strand, within Rru_A0475 at 558.057 kb on - strand, within Rru_A0475 at 558.245 kb on + strand, within Rru_A0475 at 558.297 kb on - strand, within Rru_A0475 at 558.676 kb on + strand, within Rru_A0475 at 558.676 kb on + strand, within Rru_A0475 at 558.677 kb on - strand, within Rru_A0475 at 558.704 kb on + strand, within Rru_A0475 at 558.705 kb on - strand, within Rru_A0475 at 558.708 kb on - strand, within Rru_A0475 at 559.047 kb on - strand at 559.056 kb on + strand at 559.056 kb on + strand at 559.057 kb on - strand at 559.164 kb on - strand, within Rru_A0476 at 559.180 kb on - strand, within Rru_A0476 at 559.430 kb on + strand, within Rru_A0476 at 559.430 kb on + strand, within Rru_A0476 at 559.627 kb on + strand at 559.874 kb on - strand at 560.008 kb on + strand, within Rru_A0477 at 560.380 kb on + strand, within Rru_A0477 at 560.393 kb on - strand, within Rru_A0477
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 558,048 + Rru_A0475 0.28 -0.1 558,048 + Rru_A0475 0.28 -2.5 558,048 + Rru_A0475 0.28 -2.5 558,049 - Rru_A0475 0.28 -0.9 558,056 + Rru_A0475 0.28 -0.1 558,057 - Rru_A0475 0.28 -3.1 558,057 - Rru_A0475 0.28 -0.1 558,245 + Rru_A0475 0.45 -1.9 558,297 - Rru_A0475 0.50 -2.4 558,676 + Rru_A0475 0.85 -1.3 558,676 + Rru_A0475 0.85 -2.4 558,677 - Rru_A0475 0.85 -1.7 558,704 + Rru_A0475 0.87 +2.2 558,705 - Rru_A0475 0.87 -2.8 558,708 - Rru_A0475 0.88 -0.1 559,047 - -0.1 559,056 + -1.3 559,056 + -0.1 559,057 - -0.1 559,164 - Rru_A0476 0.22 -0.1 559,180 - Rru_A0476 0.25 -1.2 559,430 + Rru_A0476 0.68 -0.1 559,430 + Rru_A0476 0.68 -0.8 559,627 + -1.7 559,874 - -0.1 560,008 + Rru_A0477 0.14 -2.5 560,380 + Rru_A0477 0.67 -0.1 560,393 - Rru_A0477 0.69 -0.1
Or see this region's nucleotide sequence