Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0463

Experiment: L-Malic Acid (C) with ammonium chloride; high light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0462 and Rru_A0463 are separated by 150 nucleotidesRru_A0463 and Rru_A0464 are separated by 57 nucleotidesRru_A0464 and Rru_A0465 are separated by 42 nucleotides Rru_A0462: Rru_A0462 - Aldehyde dehydrogenase (NCBI), at 541,668 to 543,248 _A0462 Rru_A0463: Rru_A0463 - Alanine racemase-like (NCBI), at 543,399 to 544,469 _A0463 Rru_A0464: Rru_A0464 - hypothetical protein (NCBI), at 544,527 to 545,348 _A0464 Rru_A0465: Rru_A0465 - Phosphoserine phosphatase SerB (NCBI), at 545,391 to 546,290 _A0465 Position (kb) 543 544 545Strain fitness (log2 ratio) -3 -2 -1 0 1at 542.403 kb on + strand, within Rru_A0462at 542.403 kb on + strand, within Rru_A0462at 542.404 kb on - strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.405 kb on + strand, within Rru_A0462at 542.406 kb on - strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.424 kb on + strand, within Rru_A0462at 542.425 kb on - strand, within Rru_A0462at 542.425 kb on - strand, within Rru_A0462at 542.597 kb on + strand, within Rru_A0462at 543.175 kb on + strandat 543.175 kb on + strandat 543.176 kb on - strandat 543.299 kb on + strandat 543.300 kb on - strandat 543.455 kb on + strandat 543.458 kb on + strandat 543.459 kb on - strandat 543.512 kb on + strand, within Rru_A0463at 543.513 kb on - strand, within Rru_A0463at 543.513 kb on - strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.660 kb on + strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.661 kb on - strand, within Rru_A0463at 543.662 kb on + strand, within Rru_A0463at 543.663 kb on - strand, within Rru_A0463at 543.663 kb on - strand, within Rru_A0463at 543.918 kb on + strand, within Rru_A0463at 543.918 kb on + strand, within Rru_A0463at 543.919 kb on - strand, within Rru_A0463at 543.919 kb on - strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.083 kb on + strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.084 kb on - strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.089 kb on + strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.090 kb on - strand, within Rru_A0463at 544.091 kb on + strand, within Rru_A0463at 544.091 kb on + strand, within Rru_A0463at 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.402 kb on + strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.403 kb on - strandat 544.512 kb on - strandat 544.746 kb on - strand, within Rru_A0464at 544.746 kb on - strand, within Rru_A0464at 544.793 kb on + strand, within Rru_A0464at 544.793 kb on + strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 544.794 kb on - strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.058 kb on + strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.059 kb on - strand, within Rru_A0464at 545.157 kb on + strand, within Rru_A0464at 545.157 kb on + strand, within Rru_A0464at 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.334 kb on + strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.335 kb on - strandat 545.392 kb on + strandat 545.392 kb on + strandat 545.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light
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542,403 + Rru_A0462 0.46 -2.5
542,403 + Rru_A0462 0.46 +0.0
542,404 - Rru_A0462 0.47 -2.1
542,405 + Rru_A0462 0.47 -0.1
542,405 + Rru_A0462 0.47 -0.1
542,405 + Rru_A0462 0.47 -0.1
542,406 - Rru_A0462 0.47 -0.1
542,424 + Rru_A0462 0.48 -0.1
542,424 + Rru_A0462 0.48 -0.1
542,424 + Rru_A0462 0.48 -0.1
542,425 - Rru_A0462 0.48 -0.1
542,425 - Rru_A0462 0.48 -0.1
542,597 + Rru_A0462 0.59 -1.7
543,175 + -0.1
543,175 + -0.2
543,176 - -2.7
543,299 + -0.1
543,300 - -0.1
543,455 + -0.1
543,458 + -0.1
543,459 - -1.8
543,512 + Rru_A0463 0.11 -1.8
543,513 - Rru_A0463 0.11 -0.5
543,513 - Rru_A0463 0.11 -0.1
543,660 + Rru_A0463 0.24 -0.1
543,660 + Rru_A0463 0.24 -2.8
543,660 + Rru_A0463 0.24 -0.1
543,660 + Rru_A0463 0.24 -2.1
543,660 + Rru_A0463 0.24 -2.5
543,660 + Rru_A0463 0.24 -2.0
543,660 + Rru_A0463 0.24 -0.1
543,660 + Rru_A0463 0.24 -0.1
543,661 - Rru_A0463 0.24 -0.1
543,661 - Rru_A0463 0.24 -0.1
543,661 - Rru_A0463 0.24 -0.1
543,661 - Rru_A0463 0.24 -0.1
543,661 - Rru_A0463 0.24 -0.1
543,661 - Rru_A0463 0.24 -0.1
543,661 - Rru_A0463 0.24 -1.4
543,661 - Rru_A0463 0.24 -0.1
543,661 - Rru_A0463 0.24 -0.8
543,661 - Rru_A0463 0.24 -2.4
543,661 - Rru_A0463 0.24 -0.1
543,662 + Rru_A0463 0.25 -0.1
543,663 - Rru_A0463 0.25 -0.1
543,663 - Rru_A0463 0.25 -1.1
543,918 + Rru_A0463 0.48 -1.9
543,918 + Rru_A0463 0.48 -0.1
543,919 - Rru_A0463 0.49 -0.1
543,919 - Rru_A0463 0.49 -0.1
544,083 + Rru_A0463 0.64 -0.1
544,083 + Rru_A0463 0.64 -0.1
544,083 + Rru_A0463 0.64 -0.1
544,084 - Rru_A0463 0.64 -1.5
544,084 - Rru_A0463 0.64 -0.1
544,084 - Rru_A0463 0.64 -0.1
544,084 - Rru_A0463 0.64 -2.6
544,089 + Rru_A0463 0.64 -0.1
544,089 + Rru_A0463 0.64 -0.1
544,089 + Rru_A0463 0.64 -0.1
544,089 + Rru_A0463 0.64 -1.2
544,089 + Rru_A0463 0.64 -2.0
544,089 + Rru_A0463 0.64 -0.1
544,090 - Rru_A0463 0.65 -2.9
544,090 - Rru_A0463 0.65 -1.9
544,090 - Rru_A0463 0.65 -2.1
544,090 - Rru_A0463 0.65 -0.1
544,090 - Rru_A0463 0.65 -2.3
544,090 - Rru_A0463 0.65 -0.1
544,090 - Rru_A0463 0.65 -0.1
544,091 + Rru_A0463 0.65 -0.1
544,091 + Rru_A0463 0.65 -2.6
544,402 + -0.0
544,402 + -0.1
544,402 + -0.1
544,402 + -0.1
544,402 + -0.1
544,403 - -0.1
544,403 - -0.1
544,403 - -0.1
544,403 - -0.1
544,403 - -0.1
544,512 - -1.3
544,746 - Rru_A0464 0.27 -0.1
544,746 - Rru_A0464 0.27 -0.1
544,793 + Rru_A0464 0.32 -0.1
544,793 + Rru_A0464 0.32 -2.5
544,794 - Rru_A0464 0.32 -0.1
544,794 - Rru_A0464 0.32 -0.1
544,794 - Rru_A0464 0.32 -1.7
545,058 + Rru_A0464 0.65 -0.1
545,058 + Rru_A0464 0.65 -2.7
545,058 + Rru_A0464 0.65 -2.0
545,058 + Rru_A0464 0.65 +0.0
545,059 - Rru_A0464 0.65 -0.1
545,059 - Rru_A0464 0.65 -2.1
545,059 - Rru_A0464 0.65 -0.1
545,059 - Rru_A0464 0.65 -0.1
545,059 - Rru_A0464 0.65 -0.1
545,059 - Rru_A0464 0.65 -0.1
545,157 + Rru_A0464 0.77 -2.7
545,157 + Rru_A0464 0.77 -0.1
545,334 + -1.0
545,334 + -1.6
545,334 + -0.1
545,334 + -0.1
545,334 + -0.1
545,335 - -0.1
545,335 - -0.1
545,335 - -0.1
545,335 - -1.5
545,335 - -0.1
545,392 + -0.1
545,392 + -3.1
545,393 - -0.1

Or see this region's nucleotide sequence