Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0458 and Rru_A0459 are separated by 791 nucleotides Rru_A0459 and Rru_A0460 are separated by 121 nucleotides Rru_A0460 and Rru_A0461 are separated by 105 nucleotides
Rru_A0458: Rru_A0458 - hypothetical protein (NCBI), at 537,511 to 538,188
_A0458
Rru_A0459: Rru_A0459 - hypothetical protein (NCBI), at 538,980 to 539,894
_A0459
Rru_A0460: Rru_A0460 - NADP oxidoreductase, coenzyme F420-dependent (NCBI), at 540,016 to 540,642
_A0460
Rru_A0461: Rru_A0461 - Transcriptional Regulator, LysR family (NCBI), at 540,748 to 541,641
_A0461
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 538.013 kb on - strand, within Rru_A0458 at 538.069 kb on + strand, within Rru_A0458 at 538.069 kb on + strand, within Rru_A0458 at 538.069 kb on + strand, within Rru_A0458 at 538.070 kb on - strand, within Rru_A0458 at 538.070 kb on - strand, within Rru_A0458 at 538.070 kb on - strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.307 kb on - strand at 538.319 kb on + strand at 538.320 kb on - strand at 538.549 kb on + strand at 538.655 kb on - strand at 538.767 kb on + strand at 538.767 kb on + strand at 538.767 kb on + strand at 538.768 kb on - strand at 538.795 kb on - strand at 538.898 kb on - strand at 538.916 kb on + strand at 538.917 kb on - strand at 538.968 kb on + strand at 538.969 kb on - strand at 539.035 kb on + strand at 539.035 kb on + strand at 539.200 kb on + strand, within Rru_A0459 at 539.200 kb on + strand, within Rru_A0459 at 539.201 kb on - strand, within Rru_A0459 at 539.213 kb on + strand, within Rru_A0459 at 539.214 kb on - strand, within Rru_A0459 at 539.278 kb on + strand, within Rru_A0459 at 539.278 kb on + strand, within Rru_A0459 at 539.279 kb on - strand, within Rru_A0459 at 539.279 kb on - strand, within Rru_A0459 at 539.279 kb on - strand, within Rru_A0459 at 539.279 kb on - strand, within Rru_A0459 at 539.428 kb on + strand, within Rru_A0459 at 539.429 kb on - strand, within Rru_A0459 at 539.472 kb on - strand, within Rru_A0459 at 539.481 kb on + strand, within Rru_A0459 at 539.519 kb on + strand, within Rru_A0459 at 539.546 kb on - strand, within Rru_A0459 at 539.683 kb on - strand, within Rru_A0459 at 539.698 kb on + strand, within Rru_A0459 at 539.699 kb on - strand, within Rru_A0459 at 539.735 kb on + strand, within Rru_A0459 at 539.858 kb on + strand at 539.859 kb on - strand at 539.893 kb on - strand at 539.893 kb on - strand at 539.898 kb on + strand at 539.898 kb on + strand at 539.898 kb on + strand at 539.898 kb on + strand at 539.900 kb on + strand at 539.901 kb on - strand at 539.901 kb on - strand at 539.901 kb on - strand at 540.074 kb on + strand at 540.074 kb on + strand at 540.074 kb on + strand at 540.074 kb on + strand at 540.075 kb on - strand at 540.377 kb on + strand, within Rru_A0460 at 540.377 kb on + strand, within Rru_A0460 at 540.377 kb on + strand, within Rru_A0460 at 540.377 kb on + strand, within Rru_A0460 at 540.378 kb on - strand, within Rru_A0460 at 540.378 kb on - strand, within Rru_A0460 at 540.378 kb on - strand, within Rru_A0460 at 540.378 kb on - strand, within Rru_A0460 at 540.378 kb on - strand, within Rru_A0460 at 540.381 kb on + strand, within Rru_A0460 at 540.381 kb on + strand, within Rru_A0460 at 540.381 kb on + strand, within Rru_A0460 at 540.381 kb on + strand, within Rru_A0460 at 540.381 kb on + strand, within Rru_A0460 at 540.381 kb on + strand, within Rru_A0460 at 540.381 kb on + strand, within Rru_A0460 at 540.381 kb on + strand, within Rru_A0460 at 540.382 kb on - strand, within Rru_A0460 at 540.382 kb on - strand, within Rru_A0460 at 540.382 kb on - strand, within Rru_A0460 at 540.382 kb on - strand, within Rru_A0460 at 540.382 kb on - strand, within Rru_A0460 at 540.382 kb on - strand, within Rru_A0460 at 540.627 kb on + strand at 540.627 kb on + strand at 540.628 kb on - strand at 540.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 538,013 - Rru_A0458 0.74 -1.7 538,069 + Rru_A0458 0.82 -2.3 538,069 + Rru_A0458 0.82 -1.1 538,069 + Rru_A0458 0.82 -0.1 538,070 - Rru_A0458 0.82 -0.1 538,070 - Rru_A0458 0.82 -0.1 538,070 - Rru_A0458 0.82 -0.1 538,071 + Rru_A0458 0.83 -2.2 538,071 + Rru_A0458 0.83 -1.1 538,071 + Rru_A0458 0.83 -0.1 538,071 + Rru_A0458 0.83 -0.5 538,071 + Rru_A0458 0.83 -0.1 538,071 + Rru_A0458 0.83 -0.1 538,071 + Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -1.3 538,072 - Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -2.9 538,307 - -2.4 538,319 + -0.1 538,320 - -0.1 538,549 + -0.1 538,655 - -1.7 538,767 + -2.1 538,767 + -0.1 538,767 + -0.1 538,768 - -0.1 538,795 - -0.1 538,898 - -0.1 538,916 + -0.1 538,917 - -1.8 538,968 + -0.1 538,969 - -0.1 539,035 + -0.1 539,035 + -0.1 539,200 + Rru_A0459 0.24 -0.1 539,200 + Rru_A0459 0.24 -1.2 539,201 - Rru_A0459 0.24 -0.1 539,213 + Rru_A0459 0.25 -1.1 539,214 - Rru_A0459 0.26 +0.4 539,278 + Rru_A0459 0.33 -1.1 539,278 + Rru_A0459 0.33 -2.8 539,279 - Rru_A0459 0.33 -0.1 539,279 - Rru_A0459 0.33 -0.1 539,279 - Rru_A0459 0.33 -0.1 539,279 - Rru_A0459 0.33 -0.1 539,428 + Rru_A0459 0.49 -0.1 539,429 - Rru_A0459 0.49 -0.1 539,472 - Rru_A0459 0.54 -0.1 539,481 + Rru_A0459 0.55 -1.1 539,519 + Rru_A0459 0.59 -0.1 539,546 - Rru_A0459 0.62 -2.1 539,683 - Rru_A0459 0.77 +0.6 539,698 + Rru_A0459 0.78 -0.1 539,699 - Rru_A0459 0.79 -0.1 539,735 + Rru_A0459 0.83 -0.1 539,858 + -2.9 539,859 - -0.1 539,893 - -0.1 539,893 - -0.1 539,898 + -2.2 539,898 + -0.1 539,898 + -0.1 539,898 + -0.1 539,900 + -1.0 539,901 - -0.1 539,901 - -0.1 539,901 - -0.1 540,074 + -0.1 540,074 + -0.1 540,074 + -0.1 540,074 + -0.1 540,075 - +0.1 540,377 + Rru_A0460 0.58 -0.1 540,377 + Rru_A0460 0.58 -0.1 540,377 + Rru_A0460 0.58 -0.1 540,377 + Rru_A0460 0.58 -1.5 540,378 - Rru_A0460 0.58 -0.1 540,378 - Rru_A0460 0.58 -2.7 540,378 - Rru_A0460 0.58 -1.6 540,378 - Rru_A0460 0.58 -0.1 540,378 - Rru_A0460 0.58 -0.1 540,381 + Rru_A0460 0.58 -0.1 540,381 + Rru_A0460 0.58 -0.1 540,381 + Rru_A0460 0.58 -0.1 540,381 + Rru_A0460 0.58 -3.2 540,381 + Rru_A0460 0.58 -0.1 540,381 + Rru_A0460 0.58 -1.9 540,381 + Rru_A0460 0.58 -0.1 540,381 + Rru_A0460 0.58 -0.1 540,382 - Rru_A0460 0.58 -1.6 540,382 - Rru_A0460 0.58 -0.1 540,382 - Rru_A0460 0.58 -0.1 540,382 - Rru_A0460 0.58 -0.1 540,382 - Rru_A0460 0.58 -0.1 540,382 - Rru_A0460 0.58 -2.4 540,627 + -0.1 540,627 + -0.1 540,628 - -0.1 540,628 - -0.1
Or see this region's nucleotide sequence