Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0455 and Rru_A0456 are separated by 10 nucleotides Rru_A0456 and Rru_A0457 are separated by 1 nucleotides Rru_A0457 and Rru_A0458 are separated by 356 nucleotides Rru_A0458 and Rru_A0459 are separated by 791 nucleotides
Rru_A0455: Rru_A0455 - NUDIX hydrolase (NCBI), at 536,043 to 536,558
_A0455
Rru_A0456: Rru_A0456 - Predicted transcriptional regulator (NCBI), at 536,569 to 536,856
_A0456
Rru_A0457: Rru_A0457 - Protein of unknown function DUF891 (NCBI), at 536,858 to 537,154
_A0457
Rru_A0458: Rru_A0458 - hypothetical protein (NCBI), at 537,511 to 538,188
_A0458
Rru_A0459: Rru_A0459 - hypothetical protein (NCBI), at 538,980 to 539,894
_A0459
Position (kb) 537
538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 536.751 kb on + strand, within Rru_A0456 at 536.751 kb on + strand, within Rru_A0456 at 536.751 kb on + strand, within Rru_A0456 at 536.752 kb on - strand, within Rru_A0456 at 536.752 kb on - strand, within Rru_A0456 at 536.753 kb on + strand, within Rru_A0456 at 536.753 kb on + strand, within Rru_A0456 at 536.753 kb on + strand, within Rru_A0456 at 536.753 kb on + strand, within Rru_A0456 at 536.754 kb on - strand, within Rru_A0456 at 536.754 kb on - strand, within Rru_A0456 at 536.834 kb on + strand at 536.834 kb on + strand at 536.835 kb on - strand at 536.835 kb on - strand at 536.835 kb on - strand at 536.992 kb on - strand, within Rru_A0457 at 537.034 kb on + strand, within Rru_A0457 at 537.143 kb on + strand at 537.499 kb on - strand at 537.516 kb on + strand at 537.517 kb on - strand at 537.559 kb on + strand at 537.559 kb on + strand at 537.559 kb on + strand at 537.559 kb on + strand at 537.559 kb on + strand at 537.560 kb on - strand at 537.560 kb on - strand at 537.560 kb on - strand at 537.560 kb on - strand at 537.560 kb on - strand at 537.587 kb on - strand, within Rru_A0458 at 537.587 kb on - strand, within Rru_A0458 at 537.587 kb on - strand, within Rru_A0458 at 537.587 kb on - strand, within Rru_A0458 at 537.588 kb on + strand, within Rru_A0458 at 537.730 kb on - strand, within Rru_A0458 at 537.730 kb on - strand, within Rru_A0458 at 537.925 kb on + strand, within Rru_A0458 at 537.925 kb on + strand, within Rru_A0458 at 537.925 kb on + strand, within Rru_A0458 at 537.925 kb on + strand, within Rru_A0458 at 537.925 kb on + strand, within Rru_A0458 at 537.925 kb on + strand, within Rru_A0458 at 537.925 kb on + strand, within Rru_A0458 at 537.926 kb on - strand, within Rru_A0458 at 537.926 kb on - strand, within Rru_A0458 at 537.926 kb on - strand, within Rru_A0458 at 537.940 kb on + strand, within Rru_A0458 at 537.940 kb on + strand, within Rru_A0458 at 537.970 kb on + strand, within Rru_A0458 at 537.970 kb on + strand, within Rru_A0458 at 537.971 kb on - strand, within Rru_A0458 at 537.971 kb on - strand, within Rru_A0458 at 537.971 kb on - strand, within Rru_A0458 at 538.013 kb on - strand, within Rru_A0458 at 538.069 kb on + strand, within Rru_A0458 at 538.069 kb on + strand, within Rru_A0458 at 538.069 kb on + strand, within Rru_A0458 at 538.070 kb on - strand, within Rru_A0458 at 538.070 kb on - strand, within Rru_A0458 at 538.070 kb on - strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.071 kb on + strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.072 kb on - strand, within Rru_A0458 at 538.307 kb on - strand at 538.319 kb on + strand at 538.320 kb on - strand at 538.549 kb on + strand at 538.655 kb on - strand at 538.767 kb on + strand at 538.767 kb on + strand at 538.767 kb on + strand at 538.768 kb on - strand at 538.795 kb on - strand at 538.898 kb on - strand at 538.916 kb on + strand at 538.917 kb on - strand at 538.968 kb on + strand at 538.969 kb on - strand at 539.035 kb on + strand at 539.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 536,751 + Rru_A0456 0.63 -0.1 536,751 + Rru_A0456 0.63 -1.1 536,751 + Rru_A0456 0.63 -0.1 536,752 - Rru_A0456 0.64 -0.1 536,752 - Rru_A0456 0.64 -0.1 536,753 + Rru_A0456 0.64 -0.1 536,753 + Rru_A0456 0.64 -0.1 536,753 + Rru_A0456 0.64 -0.1 536,753 + Rru_A0456 0.64 -1.1 536,754 - Rru_A0456 0.64 -0.1 536,754 - Rru_A0456 0.64 -0.1 536,834 + -0.1 536,834 + -0.1 536,835 - -1.8 536,835 - -0.1 536,835 - -2.9 536,992 - Rru_A0457 0.45 -0.1 537,034 + Rru_A0457 0.59 -0.1 537,143 + -0.1 537,499 - -0.1 537,516 + -1.1 537,517 - -0.1 537,559 + -0.1 537,559 + -0.1 537,559 + -0.1 537,559 + -0.1 537,559 + -0.1 537,560 - -1.1 537,560 - -0.4 537,560 - -0.1 537,560 - -0.1 537,560 - -1.2 537,587 - Rru_A0458 0.11 -0.1 537,587 - Rru_A0458 0.11 -1.1 537,587 - Rru_A0458 0.11 -0.1 537,587 - Rru_A0458 0.11 -0.2 537,588 + Rru_A0458 0.11 -0.6 537,730 - Rru_A0458 0.32 -2.2 537,730 - Rru_A0458 0.32 -3.5 537,925 + Rru_A0458 0.61 -0.1 537,925 + Rru_A0458 0.61 -2.2 537,925 + Rru_A0458 0.61 -0.1 537,925 + Rru_A0458 0.61 -0.1 537,925 + Rru_A0458 0.61 -0.1 537,925 + Rru_A0458 0.61 -0.4 537,925 + Rru_A0458 0.61 -1.4 537,926 - Rru_A0458 0.61 -0.1 537,926 - Rru_A0458 0.61 -1.2 537,926 - Rru_A0458 0.61 -0.1 537,940 + Rru_A0458 0.63 -0.1 537,940 + Rru_A0458 0.63 -1.6 537,970 + Rru_A0458 0.68 -0.1 537,970 + Rru_A0458 0.68 -0.1 537,971 - Rru_A0458 0.68 -0.1 537,971 - Rru_A0458 0.68 -2.1 537,971 - Rru_A0458 0.68 -2.4 538,013 - Rru_A0458 0.74 -1.7 538,069 + Rru_A0458 0.82 -2.3 538,069 + Rru_A0458 0.82 -1.1 538,069 + Rru_A0458 0.82 -0.1 538,070 - Rru_A0458 0.82 -0.1 538,070 - Rru_A0458 0.82 -0.1 538,070 - Rru_A0458 0.82 -0.1 538,071 + Rru_A0458 0.83 -2.2 538,071 + Rru_A0458 0.83 -1.1 538,071 + Rru_A0458 0.83 -0.1 538,071 + Rru_A0458 0.83 -0.5 538,071 + Rru_A0458 0.83 -0.1 538,071 + Rru_A0458 0.83 -0.1 538,071 + Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -1.3 538,072 - Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -0.1 538,072 - Rru_A0458 0.83 -2.9 538,307 - -2.4 538,319 + -0.1 538,320 - -0.1 538,549 + -0.1 538,655 - -1.7 538,767 + -2.1 538,767 + -0.1 538,767 + -0.1 538,768 - -0.1 538,795 - -0.1 538,898 - -0.1 538,916 + -0.1 538,917 - -1.8 538,968 + -0.1 538,969 - -0.1 539,035 + -0.1 539,035 + -0.1
Or see this region's nucleotide sequence