Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0303 and Rru_A0304 are separated by 334 nucleotides Rru_A0304 and Rru_A0305 are separated by 50 nucleotides Rru_A0305 and Rru_A0306 overlap by 4 nucleotides
Rru_A0303: Rru_A0303 - hypothetical protein (NCBI), at 370,032 to 371,339
_A0303
Rru_A0304: Rru_A0304 - Transcriptional Regulator, XRE family (NCBI), at 371,674 to 371,964
_A0304
Rru_A0305: Rru_A0305 - Hydrogenase expression/formation protein HypE (NCBI), at 372,015 to 373,040
_A0305
Rru_A0306: Rru_A0306 - Hydrogenase formation HypD protein (NCBI), at 373,037 to 374,197
_A0306
Position (kb) 372
373
374 Strain fitness (log2 ratio) -2
-1
0
1 at 371.375 kb on + strand at 371.439 kb on + strand at 371.491 kb on - strand at 371.491 kb on - strand at 371.492 kb on + strand at 371.493 kb on - strand at 371.493 kb on - strand at 371.493 kb on - strand at 371.493 kb on - strand at 371.561 kb on - strand at 371.731 kb on + strand, within Rru_A0304 at 372.522 kb on + strand, within Rru_A0305 at 372.523 kb on - strand, within Rru_A0305 at 372.523 kb on - strand, within Rru_A0305 at 372.523 kb on - strand, within Rru_A0305 at 372.570 kb on + strand, within Rru_A0305 at 372.741 kb on - strand, within Rru_A0305 at 372.741 kb on - strand, within Rru_A0305 at 372.757 kb on + strand, within Rru_A0305 at 372.757 kb on + strand, within Rru_A0305 at 372.757 kb on + strand, within Rru_A0305 at 372.758 kb on - strand, within Rru_A0305 at 372.758 kb on - strand, within Rru_A0305 at 373.084 kb on - strand at 373.084 kb on - strand at 373.089 kb on + strand at 373.090 kb on - strand at 373.090 kb on - strand at 373.145 kb on - strand at 373.284 kb on + strand, within Rru_A0306 at 373.285 kb on - strand, within Rru_A0306 at 373.370 kb on - strand, within Rru_A0306 at 373.418 kb on - strand, within Rru_A0306 at 373.917 kb on + strand, within Rru_A0306 at 373.917 kb on + strand, within Rru_A0306 at 373.917 kb on + strand, within Rru_A0306 at 373.918 kb on - strand, within Rru_A0306 at 373.918 kb on - strand, within Rru_A0306 at 373.918 kb on - strand, within Rru_A0306 at 373.918 kb on - strand, within Rru_A0306
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 371,375 + -0.5 371,439 + -0.0 371,491 - -0.0 371,491 - -0.0 371,492 + -0.0 371,493 - -2.3 371,493 - -0.0 371,493 - -0.0 371,493 - -0.0 371,561 - -0.0 371,731 + Rru_A0304 0.20 -0.0 372,522 + Rru_A0305 0.49 -0.0 372,523 - Rru_A0305 0.50 -0.0 372,523 - Rru_A0305 0.50 -0.2 372,523 - Rru_A0305 0.50 -0.0 372,570 + Rru_A0305 0.54 -0.0 372,741 - Rru_A0305 0.71 -0.0 372,741 - Rru_A0305 0.71 -1.3 372,757 + Rru_A0305 0.72 -0.0 372,757 + Rru_A0305 0.72 -0.0 372,757 + Rru_A0305 0.72 -0.0 372,758 - Rru_A0305 0.72 -0.0 372,758 - Rru_A0305 0.72 -1.0 373,084 - -0.0 373,084 - -0.0 373,089 + -0.8 373,090 - -0.6 373,090 - -0.0 373,145 - -0.0 373,284 + Rru_A0306 0.21 -0.0 373,285 - Rru_A0306 0.21 -0.0 373,370 - Rru_A0306 0.29 -0.0 373,418 - Rru_A0306 0.33 -0.0 373,917 + Rru_A0306 0.76 -0.0 373,917 + Rru_A0306 0.76 +0.2 373,917 + Rru_A0306 0.76 -1.6 373,918 - Rru_A0306 0.76 -0.7 373,918 - Rru_A0306 0.76 -0.0 373,918 - Rru_A0306 0.76 -0.0 373,918 - Rru_A0306 0.76 -0.0
Or see this region's nucleotide sequence