Experiment: L-Malic Acid (C) with ammonium chloride; high light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0259 and Rru_A0260 overlap by 8 nucleotides Rru_A0260 and Rru_A0261 are separated by 103 nucleotides Rru_A0261 and Rru_AR0011 are separated by 292 nucleotides Rru_AR0011 and Rru_A0262 are separated by 98 nucleotides
Rru_A0259: Rru_A0259 - Carbon starvation protein CstA (NCBI), at 320,557 to 322,602
_A0259
Rru_A0260: Rru_A0260 - Protein of unknown function DUF466 (NCBI), at 322,595 to 322,792
_A0260
Rru_A0261: Rru_A0261 - hypothetical protein (NCBI), at 322,896 to 323,807
_A0261
Rru_AR0011: Rru_AR0011 - tRNA-Gln (NCBI), at 324,100 to 324,174
_AR0011
Rru_A0262: Rru_A0262 - chemotaxis sensory transducer (NCBI), at 324,273 to 325,601
_A0262
Position (kb) 322
323
324 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 322.074 kb on + strand, within Rru_A0259 at 322.075 kb on - strand, within Rru_A0259 at 322.075 kb on - strand, within Rru_A0259 at 322.114 kb on + strand, within Rru_A0259 at 322.114 kb on + strand, within Rru_A0259 at 322.115 kb on - strand, within Rru_A0259 at 322.116 kb on + strand, within Rru_A0259 at 322.116 kb on + strand, within Rru_A0259 at 322.126 kb on - strand, within Rru_A0259 at 322.306 kb on + strand, within Rru_A0259 at 322.306 kb on + strand, within Rru_A0259 at 322.306 kb on + strand, within Rru_A0259 at 322.306 kb on + strand, within Rru_A0259 at 322.306 kb on + strand, within Rru_A0259 at 322.306 kb on + strand, within Rru_A0259 at 322.307 kb on - strand, within Rru_A0259 at 322.307 kb on - strand, within Rru_A0259 at 322.307 kb on - strand, within Rru_A0259 at 322.307 kb on - strand, within Rru_A0259 at 322.428 kb on + strand at 322.428 kb on + strand at 322.429 kb on - strand at 322.449 kb on + strand at 322.449 kb on + strand at 322.449 kb on + strand at 322.449 kb on + strand at 322.450 kb on - strand at 322.450 kb on - strand at 322.450 kb on - strand at 322.450 kb on - strand at 322.450 kb on - strand at 322.453 kb on + strand at 322.453 kb on + strand at 322.454 kb on - strand at 322.588 kb on - strand at 322.618 kb on - strand, within Rru_A0260 at 322.665 kb on - strand, within Rru_A0260 at 322.673 kb on + strand, within Rru_A0260 at 322.673 kb on + strand, within Rru_A0260 at 322.674 kb on - strand, within Rru_A0260 at 322.674 kb on - strand, within Rru_A0260 at 322.674 kb on - strand, within Rru_A0260 at 322.674 kb on - strand, within Rru_A0260 at 322.674 kb on - strand, within Rru_A0260 at 322.695 kb on - strand, within Rru_A0260 at 322.721 kb on + strand, within Rru_A0260 at 322.721 kb on + strand, within Rru_A0260 at 322.722 kb on - strand, within Rru_A0260 at 322.790 kb on + strand at 322.790 kb on + strand at 322.975 kb on + strand at 323.334 kb on + strand, within Rru_A0261 at 323.335 kb on - strand, within Rru_A0261 at 323.391 kb on + strand, within Rru_A0261 at 323.625 kb on + strand, within Rru_A0261 at 323.695 kb on + strand, within Rru_A0261 at 323.907 kb on - strand at 323.915 kb on + strand at 323.916 kb on - strand at 323.916 kb on - strand at 323.966 kb on + strand at 324.015 kb on + strand at 324.274 kb on + strand at 324.274 kb on + strand at 324.275 kb on - strand at 324.600 kb on - strand, within Rru_A0262
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; high light remove 322,074 + Rru_A0259 0.74 -0.0 322,075 - Rru_A0259 0.74 -0.0 322,075 - Rru_A0259 0.74 -0.0 322,114 + Rru_A0259 0.76 -1.6 322,114 + Rru_A0259 0.76 -1.0 322,115 - Rru_A0259 0.76 -0.0 322,116 + Rru_A0259 0.76 -0.0 322,116 + Rru_A0259 0.76 -2.5 322,126 - Rru_A0259 0.77 -0.0 322,306 + Rru_A0259 0.85 -0.0 322,306 + Rru_A0259 0.85 -0.0 322,306 + Rru_A0259 0.85 -0.0 322,306 + Rru_A0259 0.85 -0.0 322,306 + Rru_A0259 0.85 -1.0 322,306 + Rru_A0259 0.85 -0.0 322,307 - Rru_A0259 0.86 -0.0 322,307 - Rru_A0259 0.86 -0.0 322,307 - Rru_A0259 0.86 -0.0 322,307 - Rru_A0259 0.86 -0.0 322,428 + -0.0 322,428 + -0.0 322,429 - -1.0 322,449 + -1.3 322,449 + -0.0 322,449 + -0.0 322,449 + -0.0 322,450 - -1.0 322,450 - -0.0 322,450 - -0.0 322,450 - -0.0 322,450 - -0.0 322,453 + -0.0 322,453 + -0.0 322,454 - -1.0 322,588 - -0.0 322,618 - Rru_A0260 0.12 -0.0 322,665 - Rru_A0260 0.35 -0.0 322,673 + Rru_A0260 0.39 -0.0 322,673 + Rru_A0260 0.39 -0.0 322,674 - Rru_A0260 0.40 -0.0 322,674 - Rru_A0260 0.40 -0.0 322,674 - Rru_A0260 0.40 -0.0 322,674 - Rru_A0260 0.40 -0.0 322,674 - Rru_A0260 0.40 -1.0 322,695 - Rru_A0260 0.51 -1.0 322,721 + Rru_A0260 0.64 -0.0 322,721 + Rru_A0260 0.64 -0.0 322,722 - Rru_A0260 0.64 -0.0 322,790 + -0.0 322,790 + -0.0 322,975 + -0.0 323,334 + Rru_A0261 0.48 -0.0 323,335 - Rru_A0261 0.48 -1.0 323,391 + Rru_A0261 0.54 -0.2 323,625 + Rru_A0261 0.80 -0.0 323,695 + Rru_A0261 0.88 -0.0 323,907 - -2.5 323,915 + -0.0 323,916 - -2.8 323,916 - -0.0 323,966 + -0.0 324,015 + +0.5 324,274 + -0.0 324,274 + -0.0 324,275 - -2.5 324,600 - Rru_A0262 0.25 -0.0
Or see this region's nucleotide sequence